1 Response_reg#1
31-138 aa · 108 aa · 45.8% of protein
Raw token
Response_reg:31:0.0000000382:138:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS06800
Response regulator NarL family
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassRRTypeNarLLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000771665#OU24_RS06800Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 236 aa (65.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
175-220 aa · 46 aa · 19.5% of protein
Raw token
HTH_LUXR:175:0.00000000000187:220:46:58- Raw architecture: Response_reg:31:0.0000000382:138:108:111#HTH_LUXR:175:0.00000000000187:220:46:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000771665::NZ_JDUV01000009.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span81845-82555Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000009.1::G00036Context members
OU24_RS06800
Partner locus tags
OU24_RS06800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_081887346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS06800Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000009.1Sequence record reported by the local genomic context database.
Genomic interval81 845-82 555 nt711 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 845-82 555 ntGCF_000771665::NZ_JDUV01000009.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000009.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000009.1All displayed genes belong to this local TCS context.
Neighborhood span81 845-82 555 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 845 nt82 555 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
OU24_RS06800GCF_000771665#OU24_RS06800
RRNarLCurrent focus
81 845-82 555 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS07255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0990669
Simplified PFAM architecture for RROC_0990669
PFAM domain coverage: 169 / 236 aa (71.6%)
1 aa236 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[31-146] | GerE[175-227]
- Domain count: 2
- Matched identifier: RROC_0990669
- Positioned domains: Response_reg 31-146 ; Response_reg 31-146 ; GerE 175-227 ; GerE 175-227
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS07255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key