1 HisKA_3#1
221-284 aa · 64 aa · 14.6% of protein
Raw token
HisKA_3:221:0.0000000000000163:284:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU24_RS01550
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000771665
ClassHKTypeClassicLength438 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771665#OU24_RS01550Stable P2CS identifier used across views.
GenomeGCF_000771665Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length438 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 438 aa (36.1%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa438 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
331-424 aa · 94 aa · 21.5% of protein
Raw token
HATPase_c:331:0.000000000747:424:101:109- Raw architecture: HisKA_3:221:0.0000000000000163:284:64:68#HATPase_c:331:0.000000000747:424:101:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771665::NZ_JDUV01000002.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span114454-116420Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771665::NZ_JDUV01000002.1::G00017Context members
OU24_RS01550OU24_RS01555
Partner locus tags
OU24_RS01550OU24_RS01555
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_052118975.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU24_RS01550Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUV01000002.1Sequence record reported by the local genomic context database.
Genomic interval114 454-115 770 nt1 317 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span114 454-116 420 ntGCF_000771665::NZ_JDUV01000002.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771665::NZ_JDUV01000002.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUV01000002.1All displayed genes belong to this local TCS context.
Neighborhood span114 454-116 420 nt1 967 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
114 454 nt116 420 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU24_RS01550GCF_000771665#OU24_RS01550
HKClassicCurrent focus
114 454-115 770 nt · Forward (+)
OU24_RS01555GCF_000771665#OU24_RS01555
RRNarL
115 767-116 420 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS11700Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2093397
Simplified PFAM architecture for HKOC_2093397
PFAM domain coverage: 160 / 438 aa (36.5%)
1 aa438 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[221-286] | HATPase_c[329-422]
- Domain count: 2
- Matched identifier: HKOC_2093397
- Positioned domains: HisKA_3 221-286 ; HATPase_c 329-422
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS11700
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000771665
AssemblyDSM-23973 · Contighaploid
Genome composition2 867 214 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 63 · HK 17 · RR 36CheA 0 · PP 10
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key