1 HisKA#1
259-325 aa · 67 aa · 13.5% of protein
Raw token
HisKA:259:0.000000000000753:325:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU05_RS10620
Histidine kinase, Classic
Bifidobacterium longum subsp. suis DSM 20211 · GCF_000771285
ClassHKTypeClassicLength498 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771285#OU05_RS10620Stable P2CS identifier used across views.
GenomeGCF_000771285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length498 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 498 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa498 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
388-498 aa · 111 aa · 22.3% of protein
Raw token
HATPase_c:388:0.000000000000304:498:111:109- Raw architecture: HisKA:259:0.000000000000753:325:67:64#HATPase_c:388:0.000000000000304:498:111:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771285::NZ_JDUC01000015.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10005-12172Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771285::NZ_JDUC01000015.1::G00002Context members
OU05_RS10620OU05_RS08015
Partner locus tags
OU05_RS10620OU05_RS08015
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_050494332.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BAI1Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BAI1_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU05_RS10620Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUC01000015.1Sequence record reported by the local genomic context database.
Genomic interval10 005-11 501 nt1 497 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span10 005-12 172 ntGCF_000771285::NZ_JDUC01000015.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771285::NZ_JDUC01000015.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUC01000015.1All displayed genes belong to this local TCS context.
Neighborhood span10 005-12 172 nt2 168 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 005 nt12 172 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU05_RS10620GCF_000771285#OU05_RS10620
HKClassicCurrent focus
10 005-11 501 nt · Reverse (-)
OU05_RS08015GCF_000771285#OU05_RS08015
RROmpR
11 498-12 172 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS10270Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1487405
Simplified PFAM architecture for HKOC_1487405
PFAM domain coverage: 168 / 498 aa (33.7%)
1 aa498 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[260-325] | HATPase_c[389-490]
- Domain count: 2
- Matched identifier: HKOC_1487405
- Positioned domains: HisKA 260-325 ; HATPase_c 389-490
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS10270
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 4 over 4 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 597 · GCF_000771285
AssemblyDSM-20211 · Contighaploid
Genome composition2 389 965 bp · 60,0% GCBifidobacterium longum subsp. suis DSM 20211
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key