1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:0.0000000000000012:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
OU05_RS02095
Histidine kinase, Classic
Bifidobacterium longum subsp. suis DSM 20211 · GCF_000771285
ClassHKTypeClassicLength662 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000771285#OU05_RS02095Stable P2CS identifier used across views.
GenomeGCF_000771285Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage286 / 662 aa (43.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:4.37e-18:416:70:643 HATPase_c#3
480-626 aa · 147 aa · 22.2% of protein
Raw token
HATPase_c:480:2.75e-21:626:147:109- Raw architecture: HAMP:267:0.0000000000000012:335:69:69#HisKA:347:4.37e-18:416:70:64#HATPase_c:480:2.75e-21:626:147:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000771285::NZ_JDUC01000003.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span129265-132014Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000771285::NZ_JDUC01000003.1::G00005Context members
OU05_RS02090OU05_RS02095
Partner locus tags
OU05_RS02090OU05_RS02095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683038.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BS27Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BS27_BIFLNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagOU05_RS02095Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JDUC01000003.1Sequence record reported by the local genomic context database.
Genomic interval130 026-132 014 nt1 989 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span129 265-132 014 ntGCF_000771285::NZ_JDUC01000003.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000771285::NZ_JDUC01000003.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JDUC01000003.1All displayed genes belong to this local TCS context.
Neighborhood span129 265-132 014 nt2 750 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
129 265 nt132 014 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
OU05_RS02090GCF_000771285#OU05_RS02090
RROmpR
129 265-129 996 nt · Forward (+)
OU05_RS02095GCF_000771285#OU05_RS02095
HKClassicCurrent focus
130 026-132 014 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS08225Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0867226
Simplified PFAM architecture for HKOC_0867226
PFAM domain coverage: 267 / 662 aa (40.3%)
1 aa662 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-625]
- Domain count: 3
- Matched identifier: HKOC_0867226
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-625
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS08225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 597 · GCF_000771285
AssemblyDSM-20211 · Contighaploid
Genome composition2 389 965 bp · 60,0% GCBifidobacterium longum subsp. suis DSM 20211
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key