1 Response_reg#1
4-112 aa · 109 aa · 48.4% of protein
Raw token
Response_reg:4:2.42e-28:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NI20_RS0111300
Response regulator OmpR family
Oscillibacter sp. ER4 · GCF_000765235
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000765235#NI20_RS0111300Stable P2CS identifier used across views.
GenomeGCF_000765235Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Oscillospiraceae; Oscillibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:144:0.000000000000308:219:77:77- Raw architecture: Response_reg:4:2.42e-28:112:110:111#Trans_reg_C:144:0.000000000000308:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000765235::NZ_JPJG01000071.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span19929-20606Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000765235::NZ_JPJG01000071.1::G00012Context members
NI20_RS0111300
Partner locus tags
NI20_RS0111300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033121503.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT1SNF1Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT1SNF1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNI20_RS0111300Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JPJG01000071.1Sequence record reported by the local genomic context database.
Genomic interval19 929-20 606 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 929-20 606 ntGCF_000765235::NZ_JPJG01000071.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000765235::NZ_JPJG01000071.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JPJG01000071.1All displayed genes belong to this local TCS context.
Neighborhood span19 929-20 606 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 929 nt20 606 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NI20_RS0111300GCF_000765235#NI20_RS0111300
RROmpRCurrent focus
19 929-20 606 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000765235#NI20_RS0111300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1468809
Simplified PFAM architecture for RROC_1468809
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1468809
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 145-219 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_000765235#NI20_RS0111300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 519 439 · GCF_000765235
AssemblyASM76523v1 · Contighaploid
Genome composition2 729 704 bp · 57,0% GCOscillibacter sp. ER4
Signal transduction countsGenes 24 · HK 10 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyOscillospiraceaeGenusOscillibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Oscillospiraceae7Oscillibacter
Related genes
Preview from the same derived genome key