1 PAS_4#1
22-138 aa · 117 aa · 30.3% of protein
Raw token
PAS_4:22:0.000000000000224:138:117:110P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DR83_RS00030
Histidine kinase, Classic
Francisella tularensis subsp. novicida · GCF_000742085
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000742085#DR83_RS00030Stable P2CS identifier used across views.
GenomeGCF_000742085Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
PAS_4HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage293 / 386 aa (75.9%)Merged over positioned domains only.
Domain description1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
157-218 aa · 62 aa · 16.1% of protein
Raw token
HisKA:157:0.000000025:218:62:643 HATPase_c#3
273-386 aa · 114 aa · 29.5% of protein
Raw token
HATPase_c:273:1.31e-26:386:114:109- Raw architecture: PAS_4:22:0.000000000000224:138:117:110#HisKA:157:0.000000025:218:62:64#HATPase_c:273:1.31e-26:386:114:109
- Domain description: 1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000742085::NZ_KN046812.1::G00006
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span24608-25768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDR83_1929RefSeq proteinWP_032730217.1
Context group ID
GCF_000742085::NZ_KN046812.1::G00006Context members
DR83_RS00030
Partner locus tags
DR83_RS00030
Partner old locus tags
DR83_1929
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_032730217.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDR83_RS00030Primary locus identifier stored in the genes table.
Old locus tagDR83_1929Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KN046812.1Sequence record reported by the local genomic context database.
Genomic interval24 608-25 768 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 608-25 768 ntGCF_000742085::NZ_KN046812.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000742085::NZ_KN046812.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KN046812.1All displayed genes belong to this local TCS context.
Neighborhood span24 608-25 768 nt1 161 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 608 nt25 768 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
DR83_RS00030GCF_000742085#DR83_RS00030
HKClassicCurrent focus
24 608-25 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000742085#DR83_RS00030The current gene is the representative for this cluster.
PFAM architecturePAS_4 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2558115
Simplified PFAM architecture for HKOC_2558115
PFAM domain coverage: 293 / 386 aa (75.9%)
1 aa386 aa
PAS_4HisKAHATPase_c
- Simplified architecture: PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS_4[22-138] | HisKA[157-219] | HATPase_c[274-386]
- Domain count: 3
- Matched identifier: HKOC_2558115
- Positioned domains: PAS_4 22-138 ; HisKA 157-219 ; HATPase_c 274-386
Cluster members and taxonomy
Representative gene: GCF_000742085#DR83_RS00030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 264 · GCF_000742085
AssemblyASM74208v1 · Scaffoldhaploid
Genome composition1 972 338 bp · 32,5% GCFrancisella tularensis subsp. novicida
Signal transduction countsGenes 9 · HK 4 · RR 5CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key