1 HAMP#1
267-335 aa · 69 aa · 10.4% of protein
Raw token
HAMP:267:2.86e-16:335:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS03390
Histidine kinase, Classic
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassHKTypeClassicLength661 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741715#BISA_RS03390Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length661 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 661 aa (43.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa661 aa
Domain-by-domain annotation3 items
2 HisKA#2
347-416 aa · 70 aa · 10.6% of protein
Raw token
HisKA:347:2.64e-18:416:70:643 HATPase_c#3
480-627 aa · 148 aa · 22.4% of protein
Raw token
HATPase_c:480:3.76e-21:627:148:109- Raw architecture: HAMP:267:2.86e-16:335:69:69#HisKA:347:2.64e-18:416:70:64#HATPase_c:480:3.76e-21:627:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741715::NZ_JGZN01000006.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span39228-42055Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_1183RefSeq proteinWP_152597178.1
Context group ID
GCF_000741715::NZ_JGZN01000006.1::G00008Context members
BISA_RS03385BISA_RS03390
Partner locus tags
BISA_RS03385BISA_RS03390
Partner old locus tags
BISA_1182BISA_1183
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_152597178.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SDD4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SDD4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS03390Primary locus identifier stored in the genes table.
Old locus tagBISA_1183Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000006.1Sequence record reported by the local genomic context database.
Genomic interval39 974-42 055 nt2 082 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span39 228-42 055 ntGCF_000741715::NZ_JGZN01000006.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000006.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000006.1All displayed genes belong to this local TCS context.
Neighborhood span39 228-42 055 nt2 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
39 228 nt42 055 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BISA_RS03385GCF_000741715#BISA_RS03385
RROmpR
39 228-39 959 nt · Forward (+)
BISA_RS03390GCF_000741715#BISA_RS03390
HKClassicCurrent focus
39 974-42 055 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS03390The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0869955
Simplified PFAM architecture for HKOC_0869955
PFAM domain coverage: 268 / 661 aa (40.5%)
1 aa661 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[284-335] | HisKA[348-416] | HATPase_c[480-626]
- Domain count: 3
- Matched identifier: HKOC_0869955
- Positioned domains: HAMP 284-335 ; HisKA 348-416 ; HATPase_c 480-626
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS03390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key