1 HAMP#1
54-132 aa · 79 aa · 21.9% of protein
Raw token
HAMP:54:0.000000263:132:79:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS01155
Histidine kinase, Classic
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741715#BISA_RS01155Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 361 aa (70.9%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-204 aa · 67 aa · 18.6% of protein
Raw token
HisKA:138:0.0000000000000296:204:67:643 HATPase_c#3
249-358 aa · 110 aa · 30.5% of protein
Raw token
HATPase_c:249:1.02e-27:358:110:109- Raw architecture: HAMP:54:0.000000263:132:79:69#HisKA:138:0.0000000000000296:204:67:64#HATPase_c:249:1.02e-27:358:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741715::NZ_JGZN01000003.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span263642-265395Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_0196RefSeq proteinWP_033889680.1
Context group ID
GCF_000741715::NZ_JGZN01000003.1::G00004Context members
BISA_RS01150BISA_RS01155
Partner locus tags
BISA_RS01150BISA_RS01155
Partner old locus tags
BISA_0195BISA_0196
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033889680.1Primary protein accession used for annex mappings.
UniProt accessionA0A087DF58Primary UniProt accession resolved in the annex database.
UniProt IDA0A087DF58_9BIFIDisplay identifier provided by UniProt.
GO / PubMed6 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS01155Primary locus identifier stored in the genes table.
Old locus tagBISA_0196Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000003.1Sequence record reported by the local genomic context database.
Genomic interval264 310-265 395 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span263 642-265 395 ntGCF_000741715::NZ_JGZN01000003.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000003.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span263 642-265 395 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
263 642 nt265 395 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BISA_RS01150GCF_000741715#BISA_RS01150
RROmpR
263 642-264 313 nt · Forward (+)
BISA_RS01155GCF_000741715#BISA_RS01155
HKClassicCurrent focus
264 310-265 395 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS01155The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2741027
Simplified PFAM architecture for HKOC_2741027
PFAM domain coverage: 172 / 361 aa (47.6%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[138-203] | HATPase_c[253-358]
- Domain count: 2
- Matched identifier: HKOC_2741027
- Positioned domains: HisKA 138-203 ; HATPase_c 253-358
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS01155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key