1 Response_reg#1
7-120 aa · 114 aa · 51.1% of protein
Raw token
Response_reg:7:0.0000000000000114:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS01855
Response regulator NarL family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741715#BISA_RS01855Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 223 aa (77.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-217 aa · 58 aa · 26.0% of protein
Raw token
HTH_LUXR:160:1.45e-26:217:58:58- Raw architecture: Response_reg:7:0.0000000000000114:120:114:111#HTH_LUXR:160:1.45e-26:217:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741715::NZ_JGZN01000004.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span66786-67457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_1661RefSeq proteinWP_033889875.1
Context group ID
GCF_000741715::NZ_JGZN01000004.1::G00006Context members
BISA_RS01855
Partner locus tags
BISA_RS01855
Partner old locus tags
BISA_1661
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033889875.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SFA2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SFA2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS01855Primary locus identifier stored in the genes table.
Old locus tagBISA_1661Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000004.1Sequence record reported by the local genomic context database.
Genomic interval66 786-67 457 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span66 786-67 457 ntGCF_000741715::NZ_JGZN01000004.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000004.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span66 786-67 457 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 786 nt67 457 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BISA_RS01855GCF_000741715#BISA_RS01855
RRNarLCurrent focus
66 786-67 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS01855The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591411
Simplified PFAM architecture for RROC_1591411
PFAM domain coverage: 169 / 223 aa (75.8%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-119] | GerE[162-217]
- Domain count: 2
- Matched identifier: RROC_1591411
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GerE 162-217 ; GerE 162-217
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS01855
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key