1 Response_reg#1
9-106 aa · 98 aa · 44.3% of protein
Raw token
Response_reg:9:0.000000000000314:106:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS01625
Response regulator NarL family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741715#BISA_RS01625Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage152 / 221 aa (68.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
161-214 aa · 54 aa · 24.4% of protein
Raw token
HTH_LUXR:161:1.51e-19:214:54:58- Raw architecture: Response_reg:9:0.000000000000314:106:102:111#HTH_LUXR:161:1.51e-19:214:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741715::NZ_JGZN01000004.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span14053-14718Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_1616RefSeq proteinWP_033889832.1
Context group ID
GCF_000741715::NZ_JGZN01000004.1::G00005Context members
BISA_RS01625
Partner locus tags
BISA_RS01625
Partner old locus tags
BISA_1616
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033889832.1Primary protein accession used for annex mappings.
UniProt accessionA0A2M9HSG5Primary UniProt accession resolved in the annex database.
UniProt IDA0A2M9HSG5_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS01625Primary locus identifier stored in the genes table.
Old locus tagBISA_1616Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000004.1Sequence record reported by the local genomic context database.
Genomic interval14 053-14 718 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span14 053-14 718 ntGCF_000741715::NZ_JGZN01000004.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000004.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000004.1All displayed genes belong to this local TCS context.
Neighborhood span14 053-14 718 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 053 nt14 718 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BISA_RS01625GCF_000741715#BISA_RS01625
RRNarLCurrent focus
14 053-14 718 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS01625The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1680731
Simplified PFAM architecture for RROC_1680731
PFAM domain coverage: 159 / 221 aa (71.9%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-113] | GerE[160-213]
- Domain count: 2
- Matched identifier: RROC_1680731
- Positioned domains: Response_reg 9-113 ; Response_reg 9-113 ; GerE 160-213 ; GerE 160-213
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS01625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key