1 Response_reg#1
7-109 aa · 103 aa · 43.8% of protein
Raw token
Response_reg:7:4.31e-20:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS01135
Response regulator LytTR family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeLytTRLength235 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741715#BISA_RS01135Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 235 aa (82.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-228 aa · 91 aa · 38.7% of protein
Raw token
LytTR:138:1.82e-21:228:97:98- Raw architecture: Response_reg:7:4.31e-20:109:106:111#LytTR:138:1.82e-21:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741715::NZ_JGZN01000003.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span260979-261686Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_0192RefSeq proteinWP_081889949.1
Context group ID
GCF_000741715::NZ_JGZN01000003.1::G00003Context members
BISA_RS01135
Partner locus tags
BISA_RS01135
Partner old locus tags
BISA_0192
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_081889949.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7SCB6Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7SCB6_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS01135Primary locus identifier stored in the genes table.
Old locus tagBISA_0192Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000003.1Sequence record reported by the local genomic context database.
Genomic interval260 979-261 686 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span260 979-261 686 ntGCF_000741715::NZ_JGZN01000003.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000003.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000003.1All displayed genes belong to this local TCS context.
Neighborhood span260 979-261 686 nt708 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
260 979 nt261 686 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BISA_RS01135GCF_000741715#BISA_RS01135
RRLytTRCurrent focus
260 979-261 686 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS01135The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1019174
Simplified PFAM architecture for RROC_1019174
PFAM domain coverage: 192 / 235 aa (81.7%)
1 aa235 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-109] | LytTR[139-226]
- Domain count: 2
- Matched identifier: RROC_1019174
- Positioned domains: Response_reg 6-109 ; Response_reg 6-109 ; LytTR 139-226 ; LytTR 139-226
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS01135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key