1 Response_reg#1
8-109 aa · 102 aa · 42.7% of protein
Raw token
Response_reg:8:1.42e-18:109:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BISA_RS00165
Response regulator LytTR family
Bifidobacterium saguini DSM 23967 · GCF_000741715
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741715#BISA_RS00165Stable P2CS identifier used across views.
GenomeGCF_000741715Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 239 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-230 aa · 92 aa · 38.5% of protein
Raw token
LytTR:139:4.32e-22:230:97:98- Raw architecture: Response_reg:8:1.42e-18:109:105:111#LytTR:139:4.32e-22:230:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741715::NZ_JGZN01000002.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span11404-12123Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBISA_2198RefSeq proteinWP_033889503.1
Context group ID
GCF_000741715::NZ_JGZN01000002.1::G00001Context members
BISA_RS00165
Partner locus tags
BISA_RS00165
Partner old locus tags
BISA_2198
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_033889503.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX7S959Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX7S959_9BIFIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBISA_RS00165Primary locus identifier stored in the genes table.
Old locus tagBISA_2198Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZN01000002.1Sequence record reported by the local genomic context database.
Genomic interval11 404-12 123 nt720 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span11 404-12 123 ntGCF_000741715::NZ_JGZN01000002.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741715::NZ_JGZN01000002.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZN01000002.1All displayed genes belong to this local TCS context.
Neighborhood span11 404-12 123 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 404 nt12 123 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BISA_RS00165GCF_000741715#BISA_RS00165
RRLytTRCurrent focus
11 404-12 123 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741715#BISA_RS00165The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0907844
Simplified PFAM architecture for RROC_0907844
PFAM domain coverage: 194 / 239 aa (81.2%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[7-110] | LytTR[141-230]
- Domain count: 2
- Matched identifier: RROC_0907844
- Positioned domains: Response_reg 7-110 ; Response_reg 7-110 ; LytTR 141-230 ; LytTR 141-230
Cluster members and taxonomy
Representative gene: GCF_000741715#BISA_RS00165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 607 · GCF_000741715
AssemblyBifsag · Contighaploid
Genome composition2 787 036 bp · 56,5% GCBifidobacterium saguini DSM 23967
Signal transduction countsGenes 33 · HK 15 · RR 17CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key