1 HisKA#1
59-124 aa · 66 aa · 23.7% of protein
Raw token
HisKA:59:0.000000274:124:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BPSE_RS00035
Histidine kinase, Classic
Bifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505 · GCF_000741685
ClassHKTypeClassicLength279 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741685#BPSE_RS00035Stable P2CS identifier used across views.
GenomeGCF_000741685Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
External referencesMIST4 BPSE_RS00035MIST4
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length279 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 279 aa (59.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
177-277 aa · 101 aa · 36.2% of protein
Raw token
HATPase_c:177:2.52e-29:277:101:109- Raw architecture: HisKA:59:0.000000274:124:66:64#HATPase_c:177:2.52e-29:277:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741685::NZ_JGZF01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span7550-9225Genomic interval covered by the local TCS group.
Context group ID
GCF_000741685::NZ_JGZF01000001.1::G00001Context members
BPSE_RS00030BPSE_RS00035
Partner locus tags
BPSE_RS00030BPSE_RS00035
Partner old locus tags
BPSE_0006
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBPSE_RS00035Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JGZF01000001.1Sequence record reported by the local genomic context database.
Genomic interval8 194-9 225 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span7 550-9 225 ntGCF_000741685::NZ_JGZF01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741685::NZ_JGZF01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span7 550-9 225 nt1 676 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
7 550 nt9 225 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BPSE_RS00030GCF_000741685#BPSE_RS00030
RROmpR
7 550-8 197 nt · Forward (+)
BPSE_RS00035GCF_000741685#BPSE_RS00035
HKClassicCurrent focus
8 194-9 225 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741685#BPSE_RS00035The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2902396
Simplified PFAM architecture for HKOC_2902396
PFAM domain coverage: 172 / 279 aa (61.6%)
1 aa279 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[60-123] | HATPase_c[171-278]
- Domain count: 2
- Matched identifier: HKOC_2902396
- Positioned domains: HisKA 60-123 ; HATPase_c 171-278
Cluster members and taxonomy
Representative gene: GCF_000741685#BPSE_RS00035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 547 043 · GCF_000741685
AssemblyBifpsetum · Contighaploid
Genome composition2 283 768 bp · 56,5% GCBifidobacterium pseudocatenulatum DSM 20438 = JCM 1200 = LMG 10505
Signal transduction countsGenes 29 · HK 12 · RR 14CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key