1 Response_reg#1
46-152 aa · 107 aa · 41.0% of protein
Raw token
Response_reg:46:3.9e-29:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLSS_RS02875
Response regulator, AmiR_NasR family
Bifidobacterium longum subsp. suis · GCF_000741625
ClassRRTypeAmiR_NasRLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741625#BLSS_RS02875Stable P2CS identifier used across views.
GenomeGCF_000741625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 261 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 ANTAR#2
199-247 aa · 49 aa · 18.8% of protein
Raw token
ANTAR:199:5.84e-17:247:49:49- Raw architecture: Response_reg:46:3.9e-29:152:108:111#ANTAR:199:5.84e-17:247:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741625::NZ_JGZA01000015.1::G00009
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span139125-139910Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLSS_0158RefSeq proteinWP_032683837.1
Context group ID
GCF_000741625::NZ_JGZA01000015.1::G00009Context members
BLSS_RS02875
Partner locus tags
BLSS_RS02875
Partner old locus tags
BLSS_0158
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683837.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFQ6Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFQ6_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLSS_RS02875Primary locus identifier stored in the genes table.
Old locus tagBLSS_0158Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZA01000015.1Sequence record reported by the local genomic context database.
Genomic interval139 125-139 910 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span139 125-139 910 ntGCF_000741625::NZ_JGZA01000015.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741625::NZ_JGZA01000015.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZA01000015.1All displayed genes belong to this local TCS context.
Neighborhood span139 125-139 910 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
139 125 nt139 910 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BLSS_RS02875GCF_000741625#BLSS_RS02875
RRAmiR_NasRCurrent focus
139 125-139 910 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS02875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648806
Simplified PFAM architecture for RROC_0648806
PFAM domain coverage: 161 / 261 aa (61.7%)
1 aa261 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-153] | ANTAR[195-247]
- Domain count: 2
- Matched identifier: RROC_0648806
- Positioned domains: Response_reg 46-153 ; Response_reg 46-153 ; ANTAR 195-247 ; ANTAR 195-247
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS02875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_000741625
AssemblyBiflon_sub.sui · Contighaploid
Genome composition2 335 832 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key