1 Response_reg#1
3-106 aa · 104 aa · 47.9% of protein
Raw token
Response_reg:3:3.18e-20:106:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BLSS_RS02440
Response regulator NarL family
Bifidobacterium longum subsp. suis · GCF_000741625
ClassRRTypeNarLLength217 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741625#BLSS_RS02440Stable P2CS identifier used across views.
GenomeGCF_000741625Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length217 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 217 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-211 aa · 54 aa · 24.9% of protein
Raw token
HTH_LUXR:158:3.45e-20:211:54:58- Raw architecture: Response_reg:3:3.18e-20:106:104:111#HTH_LUXR:158:3.45e-20:211:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741625::NZ_JGZA01000015.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span250440-252433Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBLSS_0252RefSeq proteinWP_032683884.1
Context group ID
GCF_000741625::NZ_JGZA01000015.1::G00011Context members
BLSS_RS02440BLSS_RS02435
Partner locus tags
BLSS_RS02440BLSS_RS02435
Partner old locus tags
BLSS_0252BLSS_0253
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032683884.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFZ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFZ5_BIFLNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBLSS_RS02440Primary locus identifier stored in the genes table.
Old locus tagBLSS_0252Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGZA01000015.1Sequence record reported by the local genomic context database.
Genomic interval250 440-251 093 nt654 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span250 440-252 433 ntGCF_000741625::NZ_JGZA01000015.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741625::NZ_JGZA01000015.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGZA01000015.1All displayed genes belong to this local TCS context.
Neighborhood span250 440-252 433 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
250 440 nt252 433 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BLSS_RS02440GCF_000741625#BLSS_RS02440
RRNarLCurrent focus
250 440-251 093 nt · Reverse (-)
BLSS_RS02435GCF_000741625#BLSS_RS02435
HKClassic
251 093-252 433 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741625#BLSS_RS02440The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1849781
Simplified PFAM architecture for RROC_1849781
PFAM domain coverage: 158 / 217 aa (72.8%)
1 aa217 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-107] | GerE[158-210]
- Domain count: 2
- Matched identifier: RROC_1849781
- Positioned domains: Response_reg 3-107 ; Response_reg 3-107 ; GerE 158-210 ; GerE 158-210
Cluster members and taxonomy
Representative gene: GCF_000741625#BLSS_RS02440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 695 · GCF_000741625
AssemblyBiflon_sub.sui · Contighaploid
Genome composition2 335 832 bp · 60,0% GCBifidobacterium longum subsp. suis
Signal transduction countsGenes 23 · HK 11 · RR 12CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key