1 Response_reg#1
3-113 aa · 111 aa · 92.5% of protein
Raw token
Response_reg:3:6.43e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS11100
Response regulator, CheY family
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS11100Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage111 / 120 aa (92.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa120 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:6.43e-28:113:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000025.1::G00034
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-360Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_2179RefSeq proteinWP_043260134.1
Context group ID
GCF_000741175::NZ_JGYS01000025.1::G00034Context members
BCAL_RS11100
Partner locus tags
BCAL_RS11100
Partner old locus tags
BCAL_2179
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043260134.1Primary protein accession used for annex mappings.
UniProt accessionA0A086ZWA4Primary UniProt accession resolved in the annex database.
UniProt IDA0A086ZWA4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS11100Primary locus identifier stored in the genes table.
Old locus tagBCAL_2179Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000025.1Sequence record reported by the local genomic context database.
Genomic interval1-360 nt360 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-360 ntGCF_000741175::NZ_JGYS01000025.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000025.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000025.1All displayed genes belong to this local TCS context.
Neighborhood span1-360 nt360 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt360 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS11100GCF_000741175#BCAL_RS11100
RRCheYCurrent focus
1-360 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000771665#OU24_RS01160Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1591664
Simplified PFAM architecture for RROC_1591664
PFAM domain coverage: 182 / 223 aa (81.6%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[152-222]
- Domain count: 2
- Matched identifier: RROC_1591664
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 152-222 ; Trans_reg_C 152-222
Cluster members and taxonomy
Representative gene: GCF_000771665#OU24_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key