1 HisKA_3#1
242-300 aa · 59 aa · 7.1% of protein
Raw token
HisKA_3:242:0.00000000000000619:300:59:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS11085
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength829 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS11085Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length829 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage221 / 829 aa (26.7%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa829 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
344-434 aa · 91 aa · 11.0% of protein
Raw token
HATPase_c:344:0.0000000000603:434:105:1093 HisKA_3#3
725-795 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:725:0.0000101:795:71:68- Raw architecture: HisKA_3:242:0.00000000000000619:300:59:68#HATPase_c:344:0.0000000000603:434:105:109#HisKA_3:725:0.0000101:795:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000024.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29551-32982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_2176RefSeq proteinWP_238549701.1
Context group ID
GCF_000741175::NZ_JGYS01000024.1::G00033Context members
BCAL_RS11085BCAL_RS11090
Partner locus tags
BCAL_RS11085BCAL_RS11090
Partner old locus tags
BCAL_2176BCAL_2177
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_238549701.1Primary protein accession used for annex mappings.
UniProt accessionA0A086ZWJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A086ZWJ7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS11085Primary locus identifier stored in the genes table.
Old locus tagBCAL_2176Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000024.1Sequence record reported by the local genomic context database.
Genomic interval29 551-32 040 nt2 490 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 551-32 982 ntGCF_000741175::NZ_JGYS01000024.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000024.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000024.1All displayed genes belong to this local TCS context.
Neighborhood span29 551-32 982 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 551 nt32 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS11085GCF_000741175#BCAL_RS11085
HKClassicCurrent focus
29 551-32 040 nt · Forward (+)
BCAL_RS11090GCF_000741175#BCAL_RS11090
RRNarL
32 158-32 982 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS11085The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0520492
Simplified PFAM architecture for HKOC_0520492
PFAM domain coverage: 417 / 829 aa (50.3%)
1 aa829 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[9-139] | HisKA_3[242-305] | HATPase_c[345-435] | DUF7134[514-644]
- Domain count: 4
- Matched identifier: HKOC_0520492
- Positioned domains: DUF7134 9-139 ; HisKA_3 242-305 ; HATPase_c 345-435 ; DUF7134 514-644
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS11085
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key