1 HAMP#1
184-259 aa · 76 aa · 15.0% of protein
Raw token
HAMP:184:0.000000000301:259:76:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS09905
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength506 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS09905Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length506 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage251 / 506 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa506 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-329 aa · 67 aa · 13.2% of protein
Raw token
HisKA:263:0.00000000000581:329:67:643 HATPase_c#3
388-495 aa · 108 aa · 21.3% of protein
Raw token
HATPase_c:388:0.00000000000666:495:108:109- Raw architecture: HAMP:184:0.000000000301:259:76:69#HisKA:263:0.00000000000581:329:67:64#HATPase_c:388:0.00000000000666:495:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000019.1::G00028
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span75499-77019Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_1840RefSeq proteinWP_052118966.1
Context group ID
GCF_000741175::NZ_JGYS01000019.1::G00028Context members
BCAL_RS09905
Partner locus tags
BCAL_RS09905
Partner old locus tags
BCAL_1840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052118966.1Primary protein accession used for annex mappings.
UniProt accessionA0A086ZZG4Primary UniProt accession resolved in the annex database.
UniProt IDA0A086ZZG4_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS09905Primary locus identifier stored in the genes table.
Old locus tagBCAL_1840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000019.1Sequence record reported by the local genomic context database.
Genomic interval75 499-77 019 nt1 521 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 499-77 019 ntGCF_000741175::NZ_JGYS01000019.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000019.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000019.1All displayed genes belong to this local TCS context.
Neighborhood span75 499-77 019 nt1 521 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 499 nt77 019 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS09905GCF_000741175#BCAL_RS09905
HKClassicCurrent focus
75 499-77 019 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS09905The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1444421
Simplified PFAM architecture for HKOC_1444421
PFAM domain coverage: 229 / 506 aa (45.3%)
1 aa506 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[203-259] | HisKA[264-329] | HATPase_c[389-494]
- Domain count: 3
- Matched identifier: HKOC_1444421
- Positioned domains: HAMP 203-259 ; HisKA 264-329 ; HATPase_c 389-494
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS09905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key