1 Response_reg#1
8-120 aa · 113 aa · 43.5% of protein
Raw token
Response_reg:8:5.49e-20:120:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS08000
Response regulator LytTR family
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassRRTypeLytTRLength260 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_000741175#BCAL_RS08000Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length260 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 260 aa (77.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa260 aa
Domain-by-domain annotation2 items
2 LytTR#2
154-241 aa · 88 aa · 33.8% of protein
Raw token
LytTR:154:1.05e-21:241:93:98- Raw architecture: Response_reg:8:5.49e-20:120:116:111#LytTR:154:1.05e-21:241:93:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_000741175::NZ_JGYS01000014.1::G00024
Group size33 locus tags listed below.
HK / RR1 / 2Counts resolved for the local TCS neighborhood.
Context span3763-6680Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_2021RefSeq proteinWP_052119185.1
Context group ID
GCF_000741175::NZ_JGYS01000014.1::G00024Context members
BCAL_RS08000BCAL_RS12805BCAL_RS08005
Partner locus tags
BCAL_RS08000BCAL_RS12805BCAL_RS08005
Partner old locus tags
BCAL_2021BCAL_2022BCAL_2023
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052119185.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A2X0Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A2X0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS08000Primary locus identifier stored in the genes table.
Old locus tagBCAL_2021Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000014.1Sequence record reported by the local genomic context database.
Genomic interval3 763-4 545 nt783 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 763-6 680 ntGCF_000741175::NZ_JGYS01000014.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000014.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000014.1All displayed genes belong to this local TCS context.
Neighborhood span3 763-6 680 nt2 918 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 763 nt6 680 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
BCAL_RS08000GCF_000741175#BCAL_RS08000
RRLytTRCurrent focus
3 763-4 545 nt · Reverse (-)
BCAL_RS12805GCF_000741175#BCAL_RS12805
HKClassic
4 723-6 027 nt · Reverse (-)
BCAL_RS08005GCF_000741175#BCAL_RS08005
RROmpR
6 024-6 680 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS08000The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0653356
Simplified PFAM architecture for RROC_0653356
PFAM domain coverage: 164 / 260 aa (63.1%)
1 aa260 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[45-120] | LytTR[154-241]
- Domain count: 2
- Matched identifier: RROC_0653356
- Positioned domains: Response_reg 45-120 ; Response_reg 45-120 ; LytTR 154-241 ; LytTR 154-241
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS08000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key