1 Response_reg#1
17-119 aa · 103 aa · 45.2% of protein
Raw token
Response_reg:17:1.31e-17:119:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS05340
Response regulator NarL family
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassRRTypeNarLLength228 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS05340Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 228 aa (69.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
167-221 aa · 55 aa · 24.1% of protein
Raw token
HTH_LUXR:167:0.0000000000000104:221:55:58- Raw architecture: Response_reg:17:1.31e-17:119:103:111#HTH_LUXR:167:0.0000000000000104:221:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000007.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span65499-66185Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0896RefSeq proteinWP_043167586.1
Context group ID
GCF_000741175::NZ_JGYS01000007.1::G00019Context members
BCAL_RS05340
Partner locus tags
BCAL_RS05340
Partner old locus tags
BCAL_0896
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043167586.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9Z9L2Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9Z9L2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS05340Primary locus identifier stored in the genes table.
Old locus tagBCAL_0896Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000007.1Sequence record reported by the local genomic context database.
Genomic interval65 499-66 185 nt687 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span65 499-66 185 ntGCF_000741175::NZ_JGYS01000007.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000007.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000007.1All displayed genes belong to this local TCS context.
Neighborhood span65 499-66 185 nt687 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
65 499 nt66 185 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS05340GCF_000741175#BCAL_RS05340
RRNarLCurrent focus
65 499-66 185 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS05340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1306366
Simplified PFAM architecture for RROC_1306366
PFAM domain coverage: 156 / 228 aa (68.4%)
1 aa228 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[17-119] | GerE[168-220]
- Domain count: 2
- Matched identifier: RROC_1306366
- Positioned domains: Response_reg 17-119 ; Response_reg 17-119 ; GerE 168-220 ; GerE 168-220
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS05340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key