1 HisKA#1
185-250 aa · 66 aa · 14.4% of protein
Raw token
HisKA:185:0.0000000000112:250:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS04455
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength459 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS04455Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length459 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 459 aa (38.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa459 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-420 aa · 112 aa · 24.4% of protein
Raw token
HATPase_c:309:4.04e-30:420:112:109- Raw architecture: HisKA:185:0.0000000000112:250:66:64#HATPase_c:309:4.04e-30:420:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000006.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span56847-59153Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_1243RefSeq proteinWP_043164621.1
Context group ID
GCF_000741175::NZ_JGYS01000006.1::G00018Context members
BCAL_RS04455BCAL_RS04460
Partner locus tags
BCAL_RS04455BCAL_RS04460
Partner old locus tags
BCAL_1243BCAL_1244
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043164621.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A8X7Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A8X7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS04455Primary locus identifier stored in the genes table.
Old locus tagBCAL_1243Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000006.1Sequence record reported by the local genomic context database.
Genomic interval56 847-58 226 nt1 380 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span56 847-59 153 ntGCF_000741175::NZ_JGYS01000006.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000006.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000006.1All displayed genes belong to this local TCS context.
Neighborhood span56 847-59 153 nt2 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
56 847 nt59 153 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS04455GCF_000741175#BCAL_RS04455
HKClassicCurrent focus
56 847-58 226 nt · Forward (+)
BCAL_RS04460GCF_000741175#BCAL_RS04460
RROmpR
58 443-59 153 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS04455The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1846429
Simplified PFAM architecture for HKOC_1846429
PFAM domain coverage: 176 / 459 aa (38.3%)
1 aa459 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[185-249] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_1846429
- Positioned domains: HisKA 185-249 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS04455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key