1 H_kinase_N#1
9-145 aa · 137 aa · 27.6% of protein
Raw token
H_kinase_N:9:9.98e-50:145:138:139P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS04130
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength496 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS04130Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
H_kinase_NPAS_4HisKA_2HATPase_c
Protein length496 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage410 / 496 aa (82.7%)Merged over positioned domains only.
Domain description1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa496 aa
Domain-by-domain annotation4 items
2 PAS_4#2
175-279 aa · 105 aa · 21.2% of protein
Raw token
PAS_4:175:0.000000000000046:279:110:1103 HisKA_2#3
293-362 aa · 70 aa · 14.1% of protein
Raw token
HisKA_2:293:1.8e-30:362:71:764 HATPase_c#4
389-486 aa · 98 aa · 19.8% of protein
Raw token
HATPase_c:389:0.00000000000000226:486:107:109- Raw architecture: H_kinase_N:9:9.98e-50:145:138:139#PAS_4:175:0.000000000000046:279:110:110#HisKA_2:293:1.8e-30:362:71:76#HATPase_c:389:0.00000000000000226:486:107:109
- Domain description: 1 H_kinase_N,1 PAS_4,1 HisKA_2,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000005.1::G00017
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span224247-225737Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0810RefSeq proteinWP_043165404.1
Context group ID
GCF_000741175::NZ_JGYS01000005.1::G00017Context members
BCAL_RS04130
Partner locus tags
BCAL_RS04130
Partner old locus tags
BCAL_0810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043165404.1Primary protein accession used for annex mappings.
UniProt accessionA0A5M9ZB62Primary UniProt accession resolved in the annex database.
UniProt IDA0A5M9ZB62_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS04130Primary locus identifier stored in the genes table.
Old locus tagBCAL_0810Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000005.1Sequence record reported by the local genomic context database.
Genomic interval224 247-225 737 nt1 491 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span224 247-225 737 ntGCF_000741175::NZ_JGYS01000005.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000005.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span224 247-225 737 nt1 491 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
224 247 nt225 737 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS04130GCF_000741175#BCAL_RS04130
HKClassicCurrent focus
224 247-225 737 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS04130The current gene is the representative for this cluster.
PFAM architectureGAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1499071
Simplified PFAM architecture for HKOC_1499071
PFAM domain coverage: 416 / 496 aa (83.9%)
1 aa496 aa
GAF_PdtaSPAS_4HisKA_2HATPase_c
- Simplified architecture: GAF_PdtaS + PAS_4 + HisKA_2 + HATPase_c
- Raw architecture: GAF_PdtaS[4-141] | PAS_4[173-279] | HisKA_2[293-364] | HATPase_c[389-487]
- Domain count: 4
- Matched identifier: HKOC_1499071
- Positioned domains: GAF_PdtaS 4-141 ; PAS_4 173-279 ; HisKA_2 293-364 ; HATPase_c 389-487
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS04130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key