1 HAMP#1
56-126 aa · 71 aa · 19.8% of protein
Raw token
HAMP:56:4.64e-18:126:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS04075
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength359 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS04075Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length359 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 359 aa (68.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa359 aa
Domain-by-domain annotation3 items
2 HisKA#2
131-194 aa · 64 aa · 17.8% of protein
Raw token
HisKA:131:0.00000000000000772:194:64:643 HATPase_c#3
239-349 aa · 111 aa · 30.9% of protein
Raw token
HATPase_c:239:2.44e-23:349:112:109- Raw architecture: HAMP:56:4.64e-18:126:71:69#HisKA:131:0.00000000000000772:194:64:64#HATPase_c:239:2.44e-23:349:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000005.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span211111-212957Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0799RefSeq proteinWP_043165395.1
Context group ID
GCF_000741175::NZ_JGYS01000005.1::G00016Context members
BCAL_RS04070BCAL_RS04075
Partner locus tags
BCAL_RS04070BCAL_RS04075
Partner old locus tags
BCAL_0798BCAL_0799
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043165395.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A9U2Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A9U2_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS04075Primary locus identifier stored in the genes table.
Old locus tagBCAL_0799Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000005.1Sequence record reported by the local genomic context database.
Genomic interval211 878-212 957 nt1 080 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span211 111-212 957 ntGCF_000741175::NZ_JGYS01000005.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000005.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span211 111-212 957 nt1 847 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
211 111 nt212 957 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS04070GCF_000741175#BCAL_RS04070
RROmpR
211 111-211 866 nt · Forward (+)
BCAL_RS04075GCF_000741175#BCAL_RS04075
HKClassicCurrent focus
211 878-212 957 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS04075The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2753432
Simplified PFAM architecture for HKOC_2753432
PFAM domain coverage: 229 / 359 aa (63.8%)
1 aa359 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-125] | HisKA[131-194] | HATPase_c[239-350]
- Domain count: 3
- Matched identifier: HKOC_2753432
- Positioned domains: HAMP 73-125 ; HisKA 131-194 ; HATPase_c 239-350
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS04075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key