1 HAMP#1
224-293 aa · 70 aa · 12.0% of protein
Raw token
HAMP:224:9.91e-16:293:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS03870
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength584 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS03870Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length584 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 584 aa (42.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa584 aa
Domain-by-domain annotation3 items
2 HisKA#2
304-371 aa · 68 aa · 11.6% of protein
Raw token
HisKA:304:0.0000000000000129:371:68:643 HATPase_c#3
418-528 aa · 111 aa · 19.0% of protein
Raw token
HATPase_c:418:1.45e-30:528:111:109- Raw architecture: HAMP:224:9.91e-16:293:70:69#HisKA:304:0.0000000000000129:371:68:64#HATPase_c:418:1.45e-30:528:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000005.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span157683-160240Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0757RefSeq proteinWP_052119083.1
Context group ID
GCF_000741175::NZ_JGYS01000005.1::G00014Context members
BCAL_RS03870BCAL_RS03875
Partner locus tags
BCAL_RS03870BCAL_RS03875
Partner old locus tags
BCAL_0757BCAL_0758
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_052119083.1Primary protein accession used for annex mappings.
UniProt accessionA0A087A9Q0Primary UniProt accession resolved in the annex database.
UniProt IDA0A087A9Q0_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS03870Primary locus identifier stored in the genes table.
Old locus tagBCAL_0757Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000005.1Sequence record reported by the local genomic context database.
Genomic interval157 683-159 437 nt1 755 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span157 683-160 240 ntGCF_000741175::NZ_JGYS01000005.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000005.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000005.1All displayed genes belong to this local TCS context.
Neighborhood span157 683-160 240 nt2 558 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 683 nt160 240 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS03870GCF_000741175#BCAL_RS03870
HKClassicCurrent focus
157 683-159 437 nt · Reverse (-)
BCAL_RS03875GCF_000741175#BCAL_RS03875
RROmpR
159 434-160 240 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS03870The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1142293
Simplified PFAM architecture for HKOC_1142293
PFAM domain coverage: 230 / 584 aa (39.4%)
1 aa584 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[242-293] | HisKA[304-371] | HATPase_c[418-527]
- Domain count: 3
- Matched identifier: HKOC_1142293
- Positioned domains: HAMP 242-293 ; HisKA 304-371 ; HATPase_c 418-527
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS03870
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key