1 Response_reg#1
48-158 aa · 111 aa · 42.4% of protein
Raw token
Response_reg:48:1.45e-29:158:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS00480
Response regulator, AmiR_NasR family
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassRRTypeAmiR_NasRLength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000741175#BCAL_RS00480Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage160 / 262 aa (61.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 ANTAR#2
201-249 aa · 49 aa · 18.7% of protein
Raw token
ANTAR:201:4.19e-16:249:49:49- Raw architecture: Response_reg:48:1.45e-29:158:112:111#ANTAR:201:4.19e-16:249:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000741175::NZ_JGYS01000001.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span105057-105845Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0092RefSeq proteinWP_043167538.1
Context group ID
GCF_000741175::NZ_JGYS01000001.1::G00003Context members
BCAL_RS00480
Partner locus tags
BCAL_RS00480
Partner old locus tags
BCAL_0092
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_043167538.1Primary protein accession used for annex mappings.
UniProt accessionA0A087ACJ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A087ACJ9_9BIFIDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS00480Primary locus identifier stored in the genes table.
Old locus tagBCAL_0092Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000001.1Sequence record reported by the local genomic context database.
Genomic interval105 057-105 845 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span105 057-105 845 ntGCF_000741175::NZ_JGYS01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span105 057-105 845 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 057 nt105 845 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BCAL_RS00480GCF_000741175#BCAL_RS00480
RRAmiR_NasRCurrent focus
105 057-105 845 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS00480The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644454
Simplified PFAM architecture for RROC_0644454
PFAM domain coverage: 163 / 262 aa (62.2%)
1 aa262 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[48-157] | ANTAR[197-249]
- Domain count: 2
- Matched identifier: RROC_0644454
- Positioned domains: Response_reg 48-157 ; Response_reg 48-157 ; ANTAR 197-249 ; ANTAR 197-249
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS00480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key