1 HAMP#1
298-367 aa · 70 aa · 9.8% of protein
Raw token
HAMP:298:0.00000000000000232:367:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BCAL_RS00455
Histidine kinase, Classic
Bifidobacterium callitrichos DSM 23973 · GCF_000741175
ClassHKTypeClassicLength712 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000741175#BCAL_RS00455Stable P2CS identifier used across views.
GenomeGCF_000741175Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length712 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 712 aa (40.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa712 aa
Domain-by-domain annotation3 items
2 HisKA#2
378-447 aa · 70 aa · 9.8% of protein
Raw token
HisKA:378:6.59e-18:447:70:643 HATPase_c#3
511-658 aa · 148 aa · 20.8% of protein
Raw token
HATPase_c:511:4.68e-21:658:148:109- Raw architecture: HAMP:298:0.00000000000000232:367:70:69#HisKA:378:6.59e-18:447:70:64#HATPase_c:511:4.68e-21:658:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000741175::NZ_JGYS01000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span99119-101985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBCAL_0088RefSeq proteinWP_420796799.1
Context group ID
GCF_000741175::NZ_JGYS01000001.1::G00002Context members
BCAL_RS00450BCAL_RS00455
Partner locus tags
BCAL_RS00450BCAL_RS00455
Partner old locus tags
BCAL_0087BCAL_0088
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_420796799.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBCAL_RS00455Primary locus identifier stored in the genes table.
Old locus tagBCAL_0088Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JGYS01000001.1Sequence record reported by the local genomic context database.
Genomic interval100 093-101 985 nt1 893 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span99 119-101 985 ntGCF_000741175::NZ_JGYS01000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000741175::NZ_JGYS01000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JGYS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span99 119-101 985 nt2 867 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
99 119 nt101 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BCAL_RS00450GCF_000741175#BCAL_RS00450
RROmpR
99 119-99 850 nt · Forward (+)
BCAL_RS00455GCF_000741175#BCAL_RS00455
HKClassicCurrent focus
100 093-101 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000741175#BCAL_RS00455The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0747493
Simplified PFAM architecture for HKOC_0747493
PFAM domain coverage: 270 / 712 aa (37.9%)
1 aa712 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[314-367] | HisKA[379-447] | HATPase_c[511-657]
- Domain count: 3
- Matched identifier: HKOC_0747493
- Positioned domains: HAMP 314-367 ; HisKA 379-447 ; HATPase_c 511-657
Cluster members and taxonomy
Representative gene: GCF_000741175#BCAL_RS00455
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 437 609 · GCF_000741175
AssemblyBifcal · Contighaploid
Genome composition2 887 313 bp · 63,5% GCBifidobacterium callitrichos DSM 23973
Signal transduction countsGenes 62 · HK 16 · RR 35CheA 0 · PP 11
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key