1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.00000000123:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Y692_RS04355
Histidine kinase, Classic
Bacillus anthracis str. Carbosap · GCF_000732465
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000732465#Y692_RS04355Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 452 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-295 aa · 63 aa · 13.9% of protein
Raw token
HisKA:233:0.0000000000000118:295:63:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:4.96e-31:449:108:109- Raw architecture: HAMP:158:0.00000000123:229:72:69#HisKA:233:0.0000000000000118:295:63:64#HATPase_c:343:4.96e-31:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000732465::NZ_KL649661.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span816237-818282Genomic interval covered by the local TCS group.
Identifiers
Old locus tagY692_04425RefSeq proteinWP_000694896.1
Context group ID
GCF_000732465::NZ_KL649661.1::G00009Context members
Y692_RS04355Y692_RS04360
Partner locus tags
Y692_RS04355Y692_RS04360
Partner old locus tags
Y692_04425Y692_04430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694896.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H3AHX4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H3AHX4_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagY692_RS04355Primary locus identifier stored in the genes table.
Old locus tagY692_04425Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KL649661.1Sequence record reported by the local genomic context database.
Genomic interval816 237-817 595 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span816 237-818 282 ntGCF_000732465::NZ_KL649661.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000732465::NZ_KL649661.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KL649661.1All displayed genes belong to this local TCS context.
Neighborhood span816 237-818 282 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
816 237 nt818 282 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Y692_RS04355GCF_000732465#Y692_RS04355
HKClassicCurrent focus
816 237-817 595 nt · Reverse (-)
Y692_RS04360GCF_000732465#Y692_RS04360
RROmpR
817 599-818 282 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS10650Use this link to inspect the representative gene detail.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1936932
Simplified PFAM architecture for HKOC_1936932
PFAM domain coverage: 324 / 452 aa (71.7%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[51-151] | HAMP[176-228] | HisKA[234-296] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1936932
- Positioned domains: ArlS_N 51-151 ; HAMP 176-228 ; HisKA 234-296 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS10650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 245 029 · GCF_000732465
AssemblyASM73246v1 · Scaffoldhaploid
Genome composition5 407 671 bp · 35,0% GCBacillus anthracis str. Carbosap
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key