1 HAMP#1
158-229 aa · 72 aa · 15.9% of protein
Raw token
HAMP:158:0.00000000123:229:72:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BA_RS10650
Histidine kinase, Classic
Bacillus anthracis str. Ames · GCF_000007845
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000007845#BA_RS10650Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 452 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-295 aa · 63 aa · 13.9% of protein
Raw token
HisKA:233:0.0000000000000118:295:63:643 HATPase_c#3
343-449 aa · 107 aa · 23.7% of protein
Raw token
HATPase_c:343:4.96e-31:449:108:109- Raw architecture: HAMP:158:0.00000000123:229:72:69#HisKA:233:0.0000000000000118:295:63:64#HATPase_c:343:4.96e-31:449:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000007845::NC_003997.3::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2065368-2067413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBA2213%2CBA_2213RefSeq proteinWP_000694896.1
Context group ID
GCF_000007845::NC_003997.3::G00023Context members
BA_RS10645BA_RS10650
Partner locus tags
BA_RS10645BA_RS10650
Partner old locus tags
BA2212%2CBA_2212BA2213%2CBA_2213
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694896.1Primary protein accession used for annex mappings.
UniProt accessionA0A6H3AHX4Primary UniProt accession resolved in the annex database.
UniProt IDA0A6H3AHX4_BACANDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBA_RS10650Primary locus identifier stored in the genes table.
Old locus tagBA2213%2CBA_2213Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_003997.3Sequence record reported by the local genomic context database.
Genomic interval2 066 055-2 067 413 nt1 359 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 065 368-2 067 413 ntGCF_000007845::NC_003997.3::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000007845::NC_003997.3::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_003997.3All displayed genes belong to this local TCS context.
Neighborhood span2 065 368-2 067 413 nt2 046 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 065 368 nt2 067 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BA_RS10645GCF_000007845#BA_RS10645
RROmpR
2 065 368-2 066 051 nt · Forward (+)
BA_RS10650GCF_000007845#BA_RS10650
HKClassicCurrent focus
2 066 055-2 067 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007845#BA_RS10650The current gene is the representative for this cluster.
PFAM architectureArlS_N + HAMP + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1936932
Simplified PFAM architecture for HKOC_1936932
PFAM domain coverage: 324 / 452 aa (71.7%)
1 aa452 aa
ArlS_NHAMPHisKAHATPase_c
- Simplified architecture: ArlS_N + HAMP + HisKA + HATPase_c
- Raw architecture: ArlS_N[51-151] | HAMP[176-228] | HisKA[234-296] | HATPase_c[343-449]
- Domain count: 4
- Matched identifier: HKOC_1936932
- Positioned domains: ArlS_N 51-151 ; HAMP 176-228 ; HisKA 234-296 ; HATPase_c 343-449
Cluster members and taxonomy
Representative gene: GCF_000007845#BA_RS10650
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 198 094 · GCF_000007845
AssemblyASM784v1 · Complete Genomehaploid
Genome composition5 227 293 bp · 35,5% GCBacillus anthracis str. Ames
Signal transduction countsGenes 94 · HK 46 · RR 47CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key