1 HAMP#1
57-127 aa · 71 aa · 19.9% of protein
Raw token
HAMP:57:7.94e-19:127:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GS08_RS03575
Histidine kinase, Classic
Bifidobacterium longum · GCF_000730205
ClassHKTypeClassicLength357 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000730205#GS08_RS03575Stable P2CS identifier used across views.
GenomeGCF_000730205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length357 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 357 aa (69.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
131-195 aa · 65 aa · 18.2% of protein
Raw token
HisKA:131:1.77e-16:195:65:643 HATPase_c#3
240-350 aa · 111 aa · 31.1% of protein
Raw token
HATPase_c:240:4.63e-22:350:112:109- Raw architecture: HAMP:57:7.94e-19:127:71:69#HisKA:131:1.77e-16:195:65:64#HATPase_c:240:4.63e-22:350:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000730205::NZ_CP008885.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span865213-867008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGS08_03675RefSeq proteinWP_029679257.1
Context group ID
GCF_000730205::NZ_CP008885.1::G00004Context members
GS08_RS03575GS08_RS03580
Partner locus tags
GS08_RS03575GS08_RS03580
Partner old locus tags
GS08_03675GS08_03680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_029679257.1Primary protein accession used for annex mappings.
UniProt accessionA0A087BFN8Primary UniProt accession resolved in the annex database.
UniProt IDA0A087BFN8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGS08_RS03575Primary locus identifier stored in the genes table.
Old locus tagGS08_03675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP008885.1Sequence record reported by the local genomic context database.
Genomic interval865 213-866 286 nt1 074 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span865 213-867 008 ntGCF_000730205::NZ_CP008885.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730205::NZ_CP008885.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP008885.1All displayed genes belong to this local TCS context.
Neighborhood span865 213-867 008 nt1 796 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
865 213 nt867 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GS08_RS03575GCF_000730205#GS08_RS03575
HKClassicCurrent focus
865 213-866 286 nt · Reverse (-)
GS08_RS03580GCF_000730205#GS08_RS03580
RROmpR
866 286-867 008 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS03570Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2765053
Simplified PFAM architecture for HKOC_2765053
PFAM domain coverage: 231 / 357 aa (64.7%)
1 aa357 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[73-126] | HisKA[131-195] | HATPase_c[240-351]
- Domain count: 3
- Matched identifier: HKOC_2765053
- Positioned domains: HAMP 73-126 ; HisKA 131-195 ; HATPase_c 240-351
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS03570
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 29 over 29 total members. Page 1 / 1.
GCF_000092325#BLJ_RS03570 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_000730205
AssemblyASM73020v1 · Complete Genomehaploid
Genome composition2 480 603 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key