1 Response_reg#1
15-117 aa · 103 aa · 46.2% of protein
Raw token
Response_reg:15:0.00000000000983:117:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GS08_RS00235
Response regulator NarL family
Bifidobacterium longum · GCF_000730205
ClassRRTypeNarLLength223 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000730205#GS08_RS00235Stable P2CS identifier used across views.
GenomeGCF_000730205Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 223 aa (70.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
160-214 aa · 55 aa · 24.7% of protein
Raw token
HTH_LUXR:160:2.07e-16:214:55:58- Raw architecture: Response_reg:15:0.00000000000983:117:103:111#HTH_LUXR:160:2.07e-16:214:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000730205::NZ_CP008885.1::G00001
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55440-56111Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGS08_00240RefSeq proteinWP_013139977.1
Context group ID
GCF_000730205::NZ_CP008885.1::G00001Context members
GS08_RS00235
Partner locus tags
GS08_RS00235
Partner old locus tags
GS08_00240
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013139977.1Primary protein accession used for annex mappings.
UniProt accessionD6ZX90Primary UniProt accession resolved in the annex database.
UniProt IDD6ZX90_BIFLJDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGS08_RS00235Primary locus identifier stored in the genes table.
Old locus tagGS08_00240Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP008885.1Sequence record reported by the local genomic context database.
Genomic interval55 440-56 111 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 440-56 111 ntGCF_000730205::NZ_CP008885.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730205::NZ_CP008885.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP008885.1All displayed genes belong to this local TCS context.
Neighborhood span55 440-56 111 nt672 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 440 nt56 111 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GS08_RS00235GCF_000730205#GS08_RS00235
RRNarLCurrent focus
55 440-56 111 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS00235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1587241
Simplified PFAM architecture for RROC_1587241
PFAM domain coverage: 159 / 223 aa (71.3%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[15-120] | GerE[162-214]
- Domain count: 2
- Matched identifier: RROC_1587241
- Positioned domains: Response_reg 15-120 ; Response_reg 15-120 ; GerE 162-214 ; GerE 162-214
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS00235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 216 816 · GCF_000730205
AssemblyASM73020v1 · Complete Genomehaploid
Genome composition2 480 603 bp · 60,0% GCBifidobacterium longum
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key