1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:4.62e-29:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
EK13BL_RS04950
Response regulator NarL family
Bifidobacterium longum subsp. longum EK13 · GCF_000730135
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000730135#EK13BL_RS04950Stable P2CS identifier used across views.
GenomeGCF_000730135Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:2.37e-23:242:58:58- Raw architecture: Response_reg:9:4.62e-29:133:125:111#HTH_LUXR:185:2.37e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000730135::NZ_JNWD01000023.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span397832-401263Genomic interval covered by the local TCS group.
Identifiers
Old locus tagEK13BL_04500RefSeq proteinWP_032684650.1
Context group ID
GCF_000730135::NZ_JNWD01000023.1::G00007Context members
EK13BL_RS04950EK13BL_RS04945
Partner locus tags
EK13BL_RS04950EK13BL_RS04945
Partner old locus tags
EK13BL_04500EK13BL_04505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032684650.1Primary protein accession used for annex mappings.
UniProt accessionA0A2N0TKG8Primary UniProt accession resolved in the annex database.
UniProt IDA0A2N0TKG8_BIFLNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagEK13BL_RS04950Primary locus identifier stored in the genes table.
Old locus tagEK13BL_04500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JNWD01000023.1Sequence record reported by the local genomic context database.
Genomic interval397 832-398 578 nt747 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span397 832-401 263 ntGCF_000730135::NZ_JNWD01000023.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000730135::NZ_JNWD01000023.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JNWD01000023.1All displayed genes belong to this local TCS context.
Neighborhood span397 832-401 263 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
397 832 nt401 263 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
EK13BL_RS04950GCF_000730135#EK13BL_RS04950
RRNarLCurrent focus
397 832-398 578 nt · Reverse (-)
EK13BL_RS04945GCF_000730135#EK13BL_RS04945
HKClassic
398 654-401 263 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000730135#EK13BL_RS04950The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0744177
Simplified PFAM architecture for RROC_0744177
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0744177
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_000730135#EK13BL_RS04950
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 457 186 · GCF_000730135
AssemblyASM73013v1 · Scaffoldhaploid
Genome composition2 474 529 bp · 60,0% GCBifidobacterium longum subsp. longum EK13
Signal transduction countsGenes 22 · HK 11 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key