1 HisKA#1
124-189 aa · 66 aa · 19.2% of protein
Raw token
HisKA:124:0.00000103:189:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN165_RS09525
Histidine kinase, Classic
Clostridioides difficile E1 · GCF_000582865
ClassHKTypeClassicLength343 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000582865#BN165_RS09525Stable P2CS identifier used across views.
GenomeGCF_000582865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length343 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 343 aa (48.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
241-341 aa · 101 aa · 29.4% of protein
Raw token
HATPase_c:241:3.27e-25:341:101:109- Raw architecture: HisKA:124:0.00000103:189:66:64#HATPase_c:241:3.27e-25:341:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000582865::NZ_HF927576.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span176061-177768Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN165_1040176RefSeq proteinWP_009905636.1
Context group ID
GCF_000582865::NZ_HF927576.1::G00031Context members
BN165_RS09520BN165_RS09525
Partner locus tags
BN165_RS09520BN165_RS09525
Partner old locus tags
BN165_1040175BN165_1040176
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009905636.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX3GUW7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX3GUW7_CLODIDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN165_RS09525Primary locus identifier stored in the genes table.
Old locus tagBN165_1040176Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927576.1Sequence record reported by the local genomic context database.
Genomic interval176 737-177 768 nt1 032 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span176 061-177 768 ntGCF_000582865::NZ_HF927576.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000582865::NZ_HF927576.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927576.1All displayed genes belong to this local TCS context.
Neighborhood span176 061-177 768 nt1 708 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
176 061 nt177 768 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN165_RS09520GCF_000582865#BN165_RS09520
RROmpR
176 061-176 747 nt · Forward (+)
BN165_RS09525GCF_000582865#BN165_RS09525
HKClassicCurrent focus
176 737-177 768 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155065#QAE_RS0209420Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2827783
Simplified PFAM architecture for HKOC_2827783
PFAM domain coverage: 173 / 343 aa (50.4%)
1 aa343 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[124-189] | HATPase_c[236-342]
- Domain count: 2
- Matched identifier: HKOC_2827783
- Positioned domains: HisKA 124-189 ; HATPase_c 236-342
Cluster members and taxonomy
Representative gene: GCF_000155065#QAE_RS0209420
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 289 total members. Page 1 / 6.
GCF_000155065#QAE_RS0209420 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 225 722 · GCF_000582865
AssemblyE1 · Scaffoldhaploid
Genome composition3 945 725 bp · 29,0% GCClostridioides difficile E1
Signal transduction countsGenes 96 · HK 48 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key