1 Response_reg#1
4-114 aa · 111 aa · 50.5% of protein
Raw token
Response_reg:4:8.81e-30:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B2258_RS07585
Response regulator OmpR family
Bifidobacterium breve NCFB 2258 · GCF_000569035
ClassRRTypeOmpRLength220 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000569035#B2258_RS07585Stable P2CS identifier used across views.
GenomeGCF_000569035Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length220 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 220 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa220 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 33.2% of protein
Raw token
Trans_reg_C:147:0.000000000000243:219:77:77- Raw architecture: Response_reg:4:8.81e-30:114:111:111#Trans_reg_C:147:0.000000000000243:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000569035::NZ_CP006714.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1796661-1798621Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB2258_1510RefSeq proteinWP_012576918.1
Context group ID
GCF_000569035::NZ_CP006714.1::G00013Context members
B2258_RS07585B2258_RS07590
Partner locus tags
B2258_RS07585B2258_RS07590
Partner old locus tags
B2258_1510B2258_1511
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012576918.1Primary protein accession used for annex mappings.
UniProt accessionB7GP11Primary UniProt accession resolved in the annex database.
UniProt IDB7GP11_BIFLSDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB2258_RS07585Primary locus identifier stored in the genes table.
Old locus tagB2258_1510Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006714.1Sequence record reported by the local genomic context database.
Genomic interval1 796 661-1 797 323 nt663 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 796 661-1 798 621 ntGCF_000569035::NZ_CP006714.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000569035::NZ_CP006714.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006714.1All displayed genes belong to this local TCS context.
Neighborhood span1 796 661-1 798 621 nt1 961 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 796 661 nt1 798 621 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B2258_RS07585GCF_000569035#B2258_RS07585
RROmpRCurrent focus
1 796 661-1 797 323 nt · Forward (+)
B2258_RS07590GCF_000569035#B2258_RS07590
HKClassic
1 797 320-1 798 621 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001281425#RY69_RS01280Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0680821
Simplified PFAM architecture for RROC_0680821
PFAM domain coverage: 184 / 255 aa (72.2%)
1 aa255 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[39-149] | Trans_reg_C[182-254]
- Domain count: 2
- Matched identifier: RROC_0680821
- Positioned domains: Response_reg 39-149 ; Response_reg 39-149 ; Trans_reg_C 182-254 ; Trans_reg_C 182-254
Cluster members and taxonomy
Representative gene: GCF_001281425#RY69_RS01280
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 941 · GCF_000569035
AssemblyASM56903v1 · Complete Genomehaploid
Genome composition2 315 904 bp · 58,5% GCBifidobacterium breve NCFB 2258
Signal transduction countsGenes 31 · HK 11 · RR 17CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key