1 HisKA_3#1
247-309 aa · 63 aa · 7.6% of protein
Raw token
HisKA_3:247:6.93e-16:309:63:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B7019_RS04035
Histidine kinase, Classic
Bifidobacterium breve JCM 7019 · GCF_000569015
ClassHKTypeClassicLength824 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000569015#B7019_RS04035Stable P2CS identifier used across views.
GenomeGCF_000569015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length824 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage227 / 824 aa (27.5%)Merged over positioned domains only.
Domain description2 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HATPase_c#2
349-441 aa · 93 aa · 11.3% of protein
Raw token
HATPase_c:349:0.00000000000247:441:109:1093 HisKA_3#3
700-770 aa · 71 aa · 8.6% of protein
Raw token
HisKA_3:700:0.0000107:770:71:68- Raw architecture: HisKA_3:247:6.93e-16:309:63:68#HATPase_c:349:0.00000000000247:441:109:109#HisKA_3:700:0.0000107:770:71:68
- Domain description: 2 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000569015::NZ_CP006713.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span964977-968273Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB7019_0795RefSeq proteinWP_025221483.1
Context group ID
GCF_000569015::NZ_CP006713.1::G00006Context members
B7019_RS04030B7019_RS04035
Partner locus tags
B7019_RS04030B7019_RS04035
Partner old locus tags
B7019_0794B7019_0795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025221483.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB7019_RS04035Primary locus identifier stored in the genes table.
Old locus tagB7019_0795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006713.1Sequence record reported by the local genomic context database.
Genomic interval965 805-968 273 nt2 469 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span964 977-968 273 ntGCF_000569015::NZ_CP006713.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000569015::NZ_CP006713.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006713.1All displayed genes belong to this local TCS context.
Neighborhood span964 977-968 273 nt3 297 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
964 977 nt968 273 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B7019_RS04030GCF_000569015#B7019_RS04030
RRNarL
964 977-965 783 nt · Reverse (-)
B7019_RS04035GCF_000569015#B7019_RS04035
HKClassicCurrent focus
965 805-968 273 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000569015#B7019_RS04035The current gene is the representative for this cluster.
PFAM architectureDUF7134 + HisKA_3 + HATPase_c + DUF71344 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0525706
Simplified PFAM architecture for HKOC_0525706
PFAM domain coverage: 428 / 824 aa (51.9%)
1 aa824 aa
DUF7134HisKA_3HATPase_cDUF7134
- Simplified architecture: DUF7134 + HisKA_3 + HATPase_c + DUF7134
- Raw architecture: DUF7134[16-157] | HisKA_3[247-310] | HATPase_c[350-440] | DUF7134[488-618]
- Domain count: 4
- Matched identifier: HKOC_0525706
- Positioned domains: DUF7134 16-157 ; HisKA_3 247-310 ; HATPase_c 350-440 ; DUF7134 488-618
Cluster members and taxonomy
Representative gene: GCF_000569015#B7019_RS04035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 940 · GCF_000569015
AssemblyASM56901v1 · Complete Genomehaploid
Genome composition2 359 009 bp · 58,5% GCBifidobacterium breve JCM 7019
Signal transduction countsGenes 24 · HK 9 · RR 13CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key