1 HAMP#1
263-331 aa · 69 aa · 10.6% of protein
Raw token
HAMP:263:9.59e-16:331:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
B12L_RS06745
Histidine kinase, Classic
Bifidobacterium breve 12L · GCF_000568955
ClassHKTypeClassicLength652 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000568955#B12L_RS06745Stable P2CS identifier used across views.
GenomeGCF_000568955Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length652 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 652 aa (44.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa652 aa
Domain-by-domain annotation3 items
2 HisKA#2
343-412 aa · 70 aa · 10.7% of protein
Raw token
HisKA:343:6.85e-18:412:70:643 HATPase_c#3
476-623 aa · 148 aa · 22.7% of protein
Raw token
HATPase_c:476:4.15e-21:623:148:109- Raw architecture: HAMP:263:9.59e-16:331:69:69#HisKA:343:6.85e-18:412:70:64#HATPase_c:476:4.15e-21:623:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000568955::NZ_CP006711.2::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1567848-1570581Genomic interval covered by the local TCS group.
Identifiers
Old locus tagB12L_1302RefSeq proteinWP_376712476.1
Context group ID
GCF_000568955::NZ_CP006711.2::G00010Context members
B12L_RS06745B12L_RS06750
Partner locus tags
B12L_RS06745B12L_RS06750
Partner old locus tags
B12L_1302B12L_1303
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_376712476.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagB12L_RS06745Primary locus identifier stored in the genes table.
Old locus tagB12L_1302Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP006711.2Sequence record reported by the local genomic context database.
Genomic interval1 567 848-1 569 806 nt1 959 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 567 848-1 570 581 ntGCF_000568955::NZ_CP006711.2::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000568955::NZ_CP006711.2::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP006711.2All displayed genes belong to this local TCS context.
Neighborhood span1 567 848-1 570 581 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 567 848 nt1 570 581 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
B12L_RS06745GCF_000568955#B12L_RS06745
HKClassicCurrent focus
1 567 848-1 569 806 nt · Reverse (-)
B12L_RS06750GCF_000568955#B12L_RS06750
RROmpR
1 569 850-1 570 581 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000568955#B12L_RS06745The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0892113
Simplified PFAM architecture for HKOC_0892113
PFAM domain coverage: 268 / 652 aa (41.1%)
1 aa652 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[280-331] | HisKA[344-412] | HATPase_c[476-622]
- Domain count: 3
- Matched identifier: HKOC_0892113
- Positioned domains: HAMP 280-331 ; HisKA 344-412 ; HATPase_c 476-622
Cluster members and taxonomy
Representative gene: GCF_000568955#B12L_RS06745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 385 938 · GCF_000568955
AssemblyASM56895v2 · Complete Genomehaploid
Genome composition2 247 738 bp · 59,0% GCBifidobacterium breve 12L
Signal transduction countsGenes 20 · HK 9 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key