1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:8.5e-33:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BN169_RS02470
Response regulator OmpR family
Clostridioides difficile E16 · GCF_000531385
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000531385#BN169_RS02470Stable P2CS identifier used across views.
GenomeGCF_000531385Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:1.73e-27:227:77:77- Raw architecture: Response_reg:4:8.5e-33:112:111:111#Trans_reg_C:151:1.73e-27:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000531385::NZ_HF927700.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111107-113242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBN169_160099RefSeq proteinWP_022617664.1
Context group ID
GCF_000531385::NZ_HF927700.1::G00004Context members
BN169_RS02470BN169_RS02475
Partner locus tags
BN169_RS02470BN169_RS02475
Partner old locus tags
BN169_160099BN169_160100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022617664.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBN169_RS02470Primary locus identifier stored in the genes table.
Old locus tagBN169_160099Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_HF927700.1Sequence record reported by the local genomic context database.
Genomic interval111 107-111 799 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 107-113 242 ntGCF_000531385::NZ_HF927700.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000531385::NZ_HF927700.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_HF927700.1All displayed genes belong to this local TCS context.
Neighborhood span111 107-113 242 nt2 136 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 107 nt113 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
BN169_RS02470GCF_000531385#BN169_RS02470
RROmpRCurrent focus
111 107-111 799 nt · Forward (+)
BN169_RS02475GCF_000531385#BN169_RS02475
HKClassic
111 818-113 242 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000531385#BN169_RS02470The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202934
Simplified PFAM architecture for RROC_1202934
PFAM domain coverage: 185 / 230 aa (80.4%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1202934
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000531385#BN169_RS02470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 215 065 · GCF_000531385
AssemblyE16 · Scaffoldhaploid
Genome composition4 252 783 bp · 28,5% GCClostridioides difficile E16
Signal transduction countsGenes 101 · HK 49 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key