1 HisKA#1
88-153 aa · 66 aa · 21.2% of protein
Raw token
HisKA:88:0.000000556:153:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N769_RS0104075
Histidine kinase, Classic
Mediterraneibacter gnavus AGR2154 · GCF_000526735
ClassHKTypeClassicLength312 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000526735#N769_RS0104075Stable P2CS identifier used across views.
GenomeGCF_000526735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length312 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage164 / 312 aa (52.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa312 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-297 aa · 98 aa · 31.4% of protein
Raw token
HATPase_c:200:1.18e-20:297:98:109- Raw architecture: HisKA:88:0.000000556:153:66:64#HATPase_c:200:1.18e-20:297:98:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000526735::NZ_JAGQ01000002.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span784001-785604Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526735::NZ_JAGQ01000002.1::G00011Context members
N769_RS0104075N769_RS0104080
Partner locus tags
N769_RS0104075N769_RS0104080
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_024852852.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN769_RS0104075Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval784 001-784 939 nt939 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span784 001-785 604 ntGCF_000526735::NZ_JAGQ01000002.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526735::NZ_JAGQ01000002.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span784 001-785 604 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
784 001 nt785 604 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
N769_RS0104075GCF_000526735#N769_RS0104075
HKClassicCurrent focus
784 001-784 939 nt · Reverse (-)
N769_RS0104080GCF_000526735#N769_RS0104080
RROmpR
784 936-785 604 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526735#N769_RS0104075The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875813
Simplified PFAM architecture for HKOC_2875813
PFAM domain coverage: 164 / 312 aa (52.6%)
1 aa312 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-153] | HATPase_c[200-297]
- Domain count: 2
- Matched identifier: HKOC_2875813
- Positioned domains: HisKA 88-153 ; HATPase_c 200-297
Cluster members and taxonomy
Representative gene: GCF_000526735#N769_RS0104075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 063 · GCF_000526735
AssemblyASM52673v1 · Contighaploid
Genome composition3 724 077 bp · 42,5% GCMediterraneibacter gnavus AGR2154
Signal transduction countsGenes 87 · HK 41 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key