1 Response_reg#1
8-114 aa · 107 aa · 47.6% of protein
Raw token
Response_reg:8:9.29e-35:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N769_RS0103200
Response regulator OmpR family
Mediterraneibacter gnavus AGR2154 · GCF_000526735
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000526735#N769_RS0103200Stable P2CS identifier used across views.
GenomeGCF_000526735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 225 aa (80.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-223 aa · 73 aa · 32.4% of protein
Raw token
Trans_reg_C:151:4.25e-24:223:74:77- Raw architecture: Response_reg:8:9.29e-35:114:110:111#Trans_reg_C:151:4.25e-24:223:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000526735::NZ_JAGQ01000002.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span604732-606497Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526735::NZ_JAGQ01000002.1::G00005Context members
N769_RS0103195N769_RS0103200
Partner locus tags
N769_RS0103195N769_RS0103200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044930064.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN769_RS0103200Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval605 820-606 497 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span604 732-606 497 ntGCF_000526735::NZ_JAGQ01000002.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526735::NZ_JAGQ01000002.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span604 732-606 497 nt1 766 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
604 732 nt606 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
N769_RS0103195GCF_000526735#N769_RS0103195
HKClassic
604 732-605 832 nt · Reverse (-)
N769_RS0103200GCF_000526735#N769_RS0103200
RROmpRCurrent focus
605 820-606 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526735#N769_RS0103200The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1467218
Simplified PFAM architecture for RROC_1467218
PFAM domain coverage: 179 / 225 aa (79.6%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[8-113] | Trans_reg_C[150-222]
- Domain count: 2
- Matched identifier: RROC_1467218
- Positioned domains: Response_reg 8-113 ; Response_reg 8-113 ; Trans_reg_C 150-222 ; Trans_reg_C 150-222
Cluster members and taxonomy
Representative gene: GCF_000526735#N769_RS0103200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 063 · GCF_000526735
AssemblyASM52673v1 · Contighaploid
Genome composition3 724 077 bp · 42,5% GCMediterraneibacter gnavus AGR2154
Signal transduction countsGenes 87 · HK 41 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key