1 Response_reg#1
6-114 aa · 109 aa · 45.8% of protein
Raw token
Response_reg:6:1.37e-38:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
N769_RS0102755
Response regulator OmpR family
Mediterraneibacter gnavus AGR2154 · GCF_000526735
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000526735#N769_RS0102755Stable P2CS identifier used across views.
GenomeGCF_000526735Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 238 aa (76.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-233 aa · 74 aa · 31.1% of protein
Raw token
Trans_reg_C:160:4.85e-28:233:74:77- Raw architecture: Response_reg:6:1.37e-38:114:111:111#Trans_reg_C:160:4.85e-28:233:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000526735::NZ_JAGQ01000002.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span511298-513310Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000526735::NZ_JAGQ01000002.1::G00004Context members
N769_RS0102750N769_RS0102755
Partner locus tags
N769_RS0102750N769_RS0102755
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_024852645.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagN769_RS0102755Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAGQ01000002.1Sequence record reported by the local genomic context database.
Genomic interval512 594-513 310 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span511 298-513 310 ntGCF_000526735::NZ_JAGQ01000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000526735::NZ_JAGQ01000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAGQ01000002.1All displayed genes belong to this local TCS context.
Neighborhood span511 298-513 310 nt2 013 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
511 298 nt513 310 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
N769_RS0102750GCF_000526735#N769_RS0102750
HKClassic
511 298-512 500 nt · Reverse (-)
N769_RS0102755GCF_000526735#N769_RS0102755
RROmpRCurrent focus
512 594-513 310 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000526735#N769_RS0102755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0934487
Simplified PFAM architecture for RROC_0934487
PFAM domain coverage: 183 / 238 aa (76.9%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[159-233]
- Domain count: 2
- Matched identifier: RROC_0934487
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 159-233 ; Trans_reg_C 159-233
Cluster members and taxonomy
Representative gene: GCF_000526735#N769_RS0102755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 384 063 · GCF_000526735
AssemblyASM52673v1 · Contighaploid
Genome composition3 724 077 bp · 42,5% GCMediterraneibacter gnavus AGR2154
Signal transduction countsGenes 87 · HK 41 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key