1 KdpD#1
21-230 aa · 210 aa · 23.5% of protein
Raw token
KdpD:21:1.21e-117:230:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
X557_RS09520
Histidine kinase, Classic
Francisella tularensis subsp. holarctica PHIT-FT049 · GCF_000524575
ClassHKTypeClassicLength893 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000524575#X557_RS09520Stable P2CS identifier used across views.
GenomeGCF_000524575Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Thiotrichales; Francisellaceae; Francisella
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length893 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage388 / 893 aa (43.4%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
668-732 aa · 65 aa · 7.3% of protein
Raw token
HisKA:668:0.000000000000503:732:65:643 HATPase_c#3
777-889 aa · 113 aa · 12.7% of protein
Raw token
HATPase_c:777:4.08e-27:889:113:109- Raw architecture: KdpD:21:1.21e-117:230:210:210#HisKA:668:0.000000000000503:732:65:64#HATPase_c:777:4.08e-27:889:113:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000524575::NZ_CP007148.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1799490-1802171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagX557_09650RefSeq proteinWP_025329576.1
Context group ID
GCF_000524575::NZ_CP007148.1::G00003Context members
X557_RS09520
Partner locus tags
X557_RS09520
Partner old locus tags
X557_09650
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025329576.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagX557_RS09520Primary locus identifier stored in the genes table.
Old locus tagX557_09650Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP007148.1Sequence record reported by the local genomic context database.
Genomic interval1 799 490-1 802 171 nt2 682 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 799 490-1 802 171 ntGCF_000524575::NZ_CP007148.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000524575::NZ_CP007148.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP007148.1All displayed genes belong to this local TCS context.
Neighborhood span1 799 490-1 802 171 nt2 682 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 799 490 nt1 802 171 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
X557_RS09520GCF_000524575#X557_RS09520
HKClassicCurrent focus
1 799 490-1 802 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000524575#X557_RS09520The current gene is the representative for this cluster.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0424108
Simplified PFAM architecture for HKOC_0424108
PFAM domain coverage: 488 / 893 aa (54.6%)
1 aa893 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[21-230] | DUF4118[406-503] | HisKA[666-732] | HATPase_c[777-889]
- Domain count: 4
- Matched identifier: HKOC_0424108
- Positioned domains: KdpD 21-230 ; DUF4118 406-503 ; HisKA 666-732 ; HATPase_c 777-889
Cluster members and taxonomy
Representative gene: GCF_000524575#X557_RS09520
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 432 652 · GCF_000524575
AssemblyASM52457v1 · Complete Genomehaploid
Genome composition1 881 193 bp · 32,0% GCFrancisella tularensis subsp. holarctica PHIT-FT049
Signal transduction countsGenes 3 · HK 2 · RR 1CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderThiotrichalesFamilyFrancisellaceaeGenusFrancisella
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Thiotrichales6Francisellaceae7Francisella
Related genes
Preview from the same derived genome key