1 HisKA#1
193-248 aa · 56 aa · 13.7% of protein
Raw token
HisKA:193:0.000000000445:248:57:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BW1_RS12490
Histidine kinase, Classic
Bacillus mycoides NBRC 101238 = DSM 11821 · GCF_000513155
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000513155#BW1_RS12490Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 409 aa (39.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
296-401 aa · 106 aa · 25.9% of protein
Raw token
HATPase_c:296:8.85e-18:401:109:109- Raw architecture: HisKA:193:0.000000000445:248:57:64#HATPase_c:296:8.85e-18:401:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000513155::NZ_BAUY01000029.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span35443-36672Genomic interval covered by the local TCS group.
Identifiers
Old locus tagBW1_029_00400RefSeq proteinWP_002034440.1
Context group ID
GCF_000513155::NZ_BAUY01000029.1::G00041Context members
BW1_RS12490
Partner locus tags
BW1_RS12490
Partner old locus tags
BW1_029_00400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002034440.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBW1_RS12490Primary locus identifier stored in the genes table.
Old locus tagBW1_029_00400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_BAUY01000029.1Sequence record reported by the local genomic context database.
Genomic interval35 443-36 672 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span35 443-36 672 ntGCF_000513155::NZ_BAUY01000029.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000513155::NZ_BAUY01000029.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_BAUY01000029.1All displayed genes belong to this local TCS context.
Neighborhood span35 443-36 672 nt1 230 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
35 443 nt36 672 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BW1_RS12490GCF_000513155#BW1_RS12490
HKClassicCurrent focus
35 443-36 672 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000513155#BW1_RS12490The current gene is the representative for this cluster.
PFAM architectureMASE12 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2363026
Simplified PFAM architecture for HKOC_2363026
PFAM domain coverage: 318 / 409 aa (77.8%)
1 aa409 aa
MASE12HisKAHATPase_c
- Simplified architecture: MASE12 + HisKA + HATPase_c
- Raw architecture: MASE12[10-166] | HisKA[193-248] | HATPase_c[296-400]
- Domain count: 3
- Matched identifier: HKOC_2363026
- Positioned domains: MASE12 10-166 ; HisKA 193-248 ; HATPase_c 296-400
Cluster members and taxonomy
Representative gene: GCF_000513155#BW1_RS12490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 220 585 · GCF_000513155
AssemblyASM51315v1 · Contighaploid
Genome composition5 571 630 bp · 35,0% GCBacillus mycoides NBRC 101238 = DSM 11821
Signal transduction countsGenes 121 · HK 66 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key