1 Response_reg#1
6-106 aa · 101 aa · 47.0% of protein
Raw token
Response_reg:6:0.00000000000000376:106:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1494_RS04510
Response regulator NarL family
Bifidobacterium sp. MSTE12 · GCF_000513015
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000513015#HMPREF1494_RS04510Stable P2CS identifier used across views.
GenomeGCF_000513015Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage157 / 215 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-206 aa · 56 aa · 26.0% of protein
Raw token
HTH_LUXR:151:0.00000000000000835:206:56:58- Raw architecture: Response_reg:6:0.00000000000000376:106:101:111#HTH_LUXR:151:0.00000000000000835:206:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000513015::NZ_AZYA01000016.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4752-5399Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1494_2248RefSeq proteinWP_231495321.1
Context group ID
GCF_000513015::NZ_AZYA01000016.1::G00013Context members
HMPREF1494_RS04510
Partner locus tags
HMPREF1494_RS04510
Partner old locus tags
HMPREF1494_2248
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_231495321.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1494_RS04510Primary locus identifier stored in the genes table.
Old locus tagHMPREF1494_2248Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AZYA01000016.1Sequence record reported by the local genomic context database.
Genomic interval4 752-5 399 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 752-5 399 ntGCF_000513015::NZ_AZYA01000016.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000513015::NZ_AZYA01000016.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AZYA01000016.1All displayed genes belong to this local TCS context.
Neighborhood span4 752-5 399 nt648 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 752 nt5 399 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1494_RS04510GCF_000513015#HMPREF1494_RS04510
RRNarLCurrent focus
4 752-5 399 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032552615#E6221_RS11340Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1619717
Simplified PFAM architecture for RROC_1619717
PFAM domain coverage: 164 / 223 aa (73.5%)
1 aa223 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[14-122] | GerE[160-214]
- Domain count: 2
- Matched identifier: RROC_1619717
- Positioned domains: Response_reg 14-122 ; GerE 160-214
Cluster members and taxonomy
Representative gene: GCF_032552615#E6221_RS11340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 161 409 · GCF_000513015
AssemblyBspMSTE12v1.0 · Contighaploid
Genome composition2 595 274 bp · 58,5% GCBifidobacterium sp. MSTE12
Signal transduction countsGenes 37 · HK 15 · RR 19CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key