1 Response_reg#1
6-121 aa · 116 aa · 44.1% of protein
Raw token
Response_reg:6:6.55e-24:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS12045
Response regulator Spo0A family
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassRRTypeSpo0ALength263 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000507805#HMPREF1201_RS12045Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length263 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 263 aa (83.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa263 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
153-256 aa · 104 aa · 39.5% of protein
Raw token
Spo0A_C:153:6.94e-65:256:104:104- Raw architecture: Response_reg:6:6.55e-24:121:116:111#Spo0A_C:153:6.94e-65:256:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000507805::NZ_KI669417.1::G00037
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27528-28319Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_02434RefSeq proteinWP_004840263.1
Context group ID
GCF_000507805::NZ_KI669417.1::G00037Context members
HMPREF1201_RS12045
Partner locus tags
HMPREF1201_RS12045
Partner old locus tags
HMPREF1201_02434
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004840263.1Primary protein accession used for annex mappings.
UniProt accessionA7AYB4Primary UniProt accession resolved in the annex database.
UniProt IDA7AYB4_MEDG7Display identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS12045Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_02434Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669417.1Sequence record reported by the local genomic context database.
Genomic interval27 528-28 319 nt792 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span27 528-28 319 ntGCF_000507805::NZ_KI669417.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669417.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669417.1All displayed genes belong to this local TCS context.
Neighborhood span27 528-28 319 nt792 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 528 nt28 319 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1201_RS12045GCF_000507805#HMPREF1201_RS12045
RRSpo0ACurrent focus
27 528-28 319 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS01195Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0639449
Simplified PFAM architecture for RROC_0639449
PFAM domain coverage: 220 / 263 aa (83.7%)
1 aa263 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-121] | Spo0A_C[153-256]
- Domain count: 2
- Matched identifier: RROC_0639449
- Positioned domains: Response_reg 6-121 ; Response_reg 6-121 ; Spo0A_C 153-256 ; Spo0A_C 153-256
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS01195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key