1 Response_reg#1
6-116 aa · 111 aa · 49.3% of protein
Raw token
Response_reg:6:1.59e-32:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS11175
Response regulator OmpR family
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507805#HMPREF1201_RS11175Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-222 aa · 74 aa · 32.9% of protein
Raw token
Trans_reg_C:149:2.03e-32:222:77:77- Raw architecture: Response_reg:6:1.59e-32:116:112:111#Trans_reg_C:149:2.03e-32:222:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507805::NZ_KI669416.1::G00032
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span320914-323075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_02254RefSeq proteinWP_023924201.1
Context group ID
GCF_000507805::NZ_KI669416.1::G00032Context members
HMPREF1201_RS11175HMPREF1201_RS11180
Partner locus tags
HMPREF1201_RS11175HMPREF1201_RS11180
Partner old locus tags
HMPREF1201_02254HMPREF1201_02255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023924201.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NJ73Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NJ73_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS11175Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_02254Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669416.1Sequence record reported by the local genomic context database.
Genomic interval320 914-321 591 nt678 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span320 914-323 075 ntGCF_000507805::NZ_KI669416.1::G00032
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669416.1::G00032Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669416.1All displayed genes belong to this local TCS context.
Neighborhood span320 914-323 075 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
320 914 nt323 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1201_RS11175GCF_000507805#HMPREF1201_RS11175
RROmpRCurrent focus
320 914-321 591 nt · Forward (+)
HMPREF1201_RS11180GCF_000507805#HMPREF1201_RS11180
HKClassic
321 591-323 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS11175The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1466963
Simplified PFAM architecture for RROC_1466963
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1466963
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS11175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key