1 Response_reg#1
6-117 aa · 112 aa · 22.4% of protein
Raw token
Response_reg:6:5.32e-29:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS08645
Response regulator, unclassified
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassRRTypeunclassifiedLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507805#HMPREF1201_RS08645Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage145 / 501 aa (28.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
464-496 aa · 33 aa · 6.6% of protein
Raw token
HTH_AraC:464:0.000000201:496:33:42- Raw architecture: Response_reg:6:5.32e-29:117:112:111#HTH_AraC:464:0.000000201:496:33:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507805::NZ_KI669415.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span669896-673101Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_01745RefSeq proteinWP_004841953.1
Context group ID
GCF_000507805::NZ_KI669415.1::G00025Context members
HMPREF1201_RS08640HMPREF1201_RS08645
Partner locus tags
HMPREF1201_RS08640HMPREF1201_RS08645
Partner old locus tags
HMPREF1201_01744HMPREF1201_01745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004841953.1Primary protein accession used for annex mappings.
UniProt accessionA7B135Primary UniProt accession resolved in the annex database.
UniProt IDA7B135_MEDG7Display identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS08645Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_01745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669415.1Sequence record reported by the local genomic context database.
Genomic interval671 596-673 101 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span669 896-673 101 ntGCF_000507805::NZ_KI669415.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669415.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669415.1All displayed genes belong to this local TCS context.
Neighborhood span669 896-673 101 nt3 206 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
669 896 nt673 101 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1201_RS08640GCF_000507805#HMPREF1201_RS08640
HKClassic
669 896-671 605 nt · Forward (+)
HMPREF1201_RS08645GCF_000507805#HMPREF1201_RS08645
RRunclassifiedCurrent focus
671 596-673 101 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS05550Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0156936
Simplified PFAM architecture for RROC_0156936
PFAM domain coverage: 189 / 501 aa (37.7%)
1 aa501 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[421-497]
- Domain count: 2
- Matched identifier: RROC_0156936
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 421-497 ; HTH_18 421-497
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS05550
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key