1 Response_reg#1
4-121 aa · 118 aa · 50.4% of protein
Raw token
Response_reg:4:4.15e-18:121:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS07260
Response regulator LytTR family
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassRRTypeLytTRLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000507805#HMPREF1201_RS07260Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 234 aa (89.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-227 aa · 91 aa · 38.9% of protein
Raw token
LytTR:137:3.44e-22:227:97:98- Raw architecture: Response_reg:4:4.15e-18:121:121:111#LytTR:137:3.44e-22:227:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000507805::NZ_KI669415.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span373460-374164Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_01469RefSeq proteinWP_009245125.1
Context group ID
GCF_000507805::NZ_KI669415.1::G00018Context members
HMPREF1201_RS07260
Partner locus tags
HMPREF1201_RS07260
Partner old locus tags
HMPREF1201_01469
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009245125.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NSZ2Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NSZ2_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS07260Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_01469Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669415.1Sequence record reported by the local genomic context database.
Genomic interval373 460-374 164 nt705 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span373 460-374 164 ntGCF_000507805::NZ_KI669415.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669415.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669415.1All displayed genes belong to this local TCS context.
Neighborhood span373 460-374 164 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
373 460 nt374 164 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1201_RS07260GCF_000507805#HMPREF1201_RS07260
RRLytTRCurrent focus
373 460-374 164 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS07260The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049249
Simplified PFAM architecture for RROC_1049249
PFAM domain coverage: 194 / 234 aa (82.9%)
1 aa234 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[139-227]
- Domain count: 2
- Matched identifier: RROC_1049249
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 139-227 ; LytTR 139-227
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS07260
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key