1 Response_reg#1
4-114 aa · 111 aa · 48.3% of protein
Raw token
Response_reg:4:2.92e-33:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1201_RS00630
Response regulator OmpR family
Mediterraneibacter gnavus CC55_001C · GCF_000507805
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507805#HMPREF1201_RS00630Stable P2CS identifier used across views.
GenomeGCF_000507805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 230 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:148:3.99e-27:224:78:77- Raw architecture: Response_reg:4:2.92e-33:114:111:111#Trans_reg_C:148:3.99e-27:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507805::NZ_KI669414.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119650-121370Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1201_00125RefSeq proteinWP_009244710.1
Context group ID
GCF_000507805::NZ_KI669414.1::G00001Context members
HMPREF1201_RS00630HMPREF1201_RS00635
Partner locus tags
HMPREF1201_RS00630HMPREF1201_RS00635
Partner old locus tags
HMPREF1201_00125HMPREF1201_00126
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009244710.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NVD1Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NVD1_MEDG5Display identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1201_RS00630Primary locus identifier stored in the genes table.
Old locus tagHMPREF1201_00125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669414.1Sequence record reported by the local genomic context database.
Genomic interval119 650-120 342 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span119 650-121 370 ntGCF_000507805::NZ_KI669414.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507805::NZ_KI669414.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669414.1All displayed genes belong to this local TCS context.
Neighborhood span119 650-121 370 nt1 721 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 650 nt121 370 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1201_RS00630GCF_000507805#HMPREF1201_RS00630
RROmpRCurrent focus
119 650-120 342 nt · Forward (+)
HMPREF1201_RS00635GCF_000507805#HMPREF1201_RS00635
HKClassic
120 339-121 370 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS00630The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202746
Simplified PFAM architecture for RROC_1202746
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1202746
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS00630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 375 · GCF_000507805
AssemblyRumi_gnav_CC55_001C_V1 · Scaffoldhaploid
Genome composition3 181 861 bp · 43,0% GCMediterraneibacter gnavus CC55_001C
Signal transduction countsGenes 78 · HK 37 · RR 40CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key