1 Response_reg#1
1-71 aa · 71 aa · 92.2% of protein
Raw token
Response_reg:1:2.98e-17:71:71:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS16560
Response regulator, CheY family
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassRRTypeCheYLength77 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_000507785#HMPREF1202_RS16560Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length77 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage71 / 77 aa (92.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa77 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.98e-17:71:71:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_000507785::NZ_KI669411.1::G00026
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span33996-41259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_02530RefSeq proteinWP_023923124.1
Context group ID
GCF_000507785::NZ_KI669411.1::G00026Context members
HMPREF1202_RS16560HMPREF1202_RS12570HMPREF1202_RS12575HMPREF1202_RS12580
Partner locus tags
HMPREF1202_RS16560HMPREF1202_RS12570HMPREF1202_RS12575HMPREF1202_RS12580
Partner old locus tags
HMPREF1202_02530HMPREF1202_02531HMPREF1202_02532HMPREF1202_02533
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923124.1Primary protein accession used for annex mappings.
UniProt accessionV8BLF9Primary UniProt accession resolved in the annex database.
UniProt IDV8BLF9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS16560Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_02530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669411.1Sequence record reported by the local genomic context database.
Genomic interval33 996-34 229 nt234 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 996-41 259 ntGCF_000507785::NZ_KI669411.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669411.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669411.1All displayed genes belong to this local TCS context.
Neighborhood span33 996-41 259 nt7 264 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 996 nt41 259 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
HMPREF1202_RS16560GCF_000507785#HMPREF1202_RS16560
RRCheYCurrent focus
33 996-34 229 nt · Reverse (-)
HMPREF1202_RS12570GCF_000507785#HMPREF1202_RS12570
HKClassic
34 284-35 102 nt · Reverse (-)
HMPREF1202_RS12575GCF_000507785#HMPREF1202_RS12575
HKHybrid
35 237-38 005 nt · Reverse (-)
HMPREF1202_RS12580GCF_000507785#HMPREF1202_RS12580
HKHybrid
38 053-41 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507785#HMPREF1202_RS16560The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2476821
Simplified PFAM architecture for RROC_2476821
PFAM domain coverage: 71 / 77 aa (92.2%)
1 aa77 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[1-71]
- Domain count: 1
- Matched identifier: RROC_2476821
- Positioned domains: Response_reg 1-71 ; Response_reg 1-71
Cluster members and taxonomy
Representative gene: GCF_000507785#HMPREF1202_RS16560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key