1 HisKA#1
1-59 aa · 59 aa · 21.7% of protein
Raw token
HisKA:1:0.00000000000169:59:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS12570
Histidine kinase, Classic
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassHKTypeClassicLength272 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_000507785#HMPREF1202_RS12570Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 272 aa (65.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
106-223 aa · 118 aa · 43.4% of protein
Raw token
HATPase_c:106:5.18e-28:223:119:109- Raw architecture: HisKA:1:0.00000000000169:59:59:64#HATPase_c:106:5.18e-28:223:119:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_000507785::NZ_KI669411.1::G00026
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span33996-41259Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_02531RefSeq proteinWP_023923125.1
Context group ID
GCF_000507785::NZ_KI669411.1::G00026Context members
HMPREF1202_RS16560HMPREF1202_RS12570HMPREF1202_RS12575HMPREF1202_RS12580
Partner locus tags
HMPREF1202_RS16560HMPREF1202_RS12570HMPREF1202_RS12575HMPREF1202_RS12580
Partner old locus tags
HMPREF1202_02530HMPREF1202_02531HMPREF1202_02532HMPREF1202_02533
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923125.1Primary protein accession used for annex mappings.
UniProt accessionV8BME0Primary UniProt accession resolved in the annex database.
UniProt IDV8BME0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS12570Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_02531Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669411.1Sequence record reported by the local genomic context database.
Genomic interval34 284-35 102 nt819 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 996-41 259 ntGCF_000507785::NZ_KI669411.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669411.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669411.1All displayed genes belong to this local TCS context.
Neighborhood span33 996-41 259 nt7 264 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 996 nt41 259 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
HMPREF1202_RS16560GCF_000507785#HMPREF1202_RS16560
RRCheY
33 996-34 229 nt · Reverse (-)
HMPREF1202_RS12570GCF_000507785#HMPREF1202_RS12570
HKClassicCurrent focus
34 284-35 102 nt · Reverse (-)
HMPREF1202_RS12575GCF_000507785#HMPREF1202_RS12575
HKHybrid
35 237-38 005 nt · Reverse (-)
HMPREF1202_RS12580GCF_000507785#HMPREF1202_RS12580
HKHybrid
38 053-41 259 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507785#HMPREF1202_RS12570The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2906208
Simplified PFAM architecture for HKOC_2906208
PFAM domain coverage: 175 / 272 aa (64.3%)
1 aa272 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[1-59] | HATPase_c[107-222]
- Domain count: 2
- Matched identifier: HKOC_2906208
- Positioned domains: HisKA 1-59 ; HATPase_c 107-222
Cluster members and taxonomy
Representative gene: GCF_000507785#HMPREF1202_RS12570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key