1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:5.05e-39:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1202_RS08505
Response regulator OmpR family
[Ruminococcus] lactaris CC59_002D · GCF_000507785
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000507785#HMPREF1202_RS08505Stable P2CS identifier used across views.
GenomeGCF_000507785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 229 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
152-227 aa · 76 aa · 33.2% of protein
Raw token
Trans_reg_C:152:2.42e-38:227:76:77- Raw architecture: Response_reg:5:5.05e-39:114:111:111#Trans_reg_C:152:2.42e-38:227:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000507785::NZ_KI669409.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span149387-151508Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1202_01704RefSeq proteinWP_005610260.1
Context group ID
GCF_000507785::NZ_KI669409.1::G00020Context members
HMPREF1202_RS08505HMPREF1202_RS08510
Partner locus tags
HMPREF1202_RS08505HMPREF1202_RS08510
Partner old locus tags
HMPREF1202_01704HMPREF1202_01705
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005610260.1Primary protein accession used for annex mappings.
UniProt accessionB5CMB1Primary UniProt accession resolved in the annex database.
UniProt IDB5CMB1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1202_RS08505Primary locus identifier stored in the genes table.
Old locus tagHMPREF1202_01704Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KI669409.1Sequence record reported by the local genomic context database.
Genomic interval149 387-150 076 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 387-151 508 ntGCF_000507785::NZ_KI669409.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000507785::NZ_KI669409.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KI669409.1All displayed genes belong to this local TCS context.
Neighborhood span149 387-151 508 nt2 122 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 387 nt151 508 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1202_RS08505GCF_000507785#HMPREF1202_RS08505
RROmpRCurrent focus
149 387-150 076 nt · Forward (+)
HMPREF1202_RS08510GCF_000507785#HMPREF1202_RS08510
HKClassic
150 033-151 508 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000155205#RUMLAC_RS05480Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246774
Simplified PFAM architecture for RROC_1246774
PFAM domain coverage: 185 / 229 aa (80.8%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[152-227]
- Domain count: 2
- Matched identifier: RROC_1246774
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 152-227 ; Trans_reg_C 152-227
Cluster members and taxonomy
Representative gene: GCF_000155205#RUMLAC_RS05480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 073 376 · GCF_000507785
AssemblyRumi_lact_CC59_002D_V1 · Scaffoldhaploid
Genome composition3 086 899 bp · 42,5% GC[Ruminococcus] lactaris CC59_002D
Signal transduction countsGenes 54 · HK 27 · RR 27CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key